Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2249 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTCTGTAAAATTTGCAAAAAAGGATTTGGTTGTGGAAGAGCTCTGGGAGGACACATGAGGGCTCATGGAATAGGAGATGAATCAGGTCACATGGATGATGATGACCCAGCAAGTGATTGGGAAGATAGGCTTGGTGGAAATGTTCCACCAAGCAACAAGCGCATGTATGCTCTTAGAACAAACCCTAATAGGTTAAAGAGTTGTAGGGTGTGTGAAAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCCTTTCTTGAGCACGGTAAATGCACCTCCGAGGACGCAGAGTCCCTCGTATCCTCTCCAGGGTCCGATGCTGCTGATGATGGCATCGAACCTACCAGGAGAGGATGCGGGTGGTCCAAAAGAAAGAGGTCGTTAAGAGCAAAAGTGGGTAGCTTCAATTACAATTGCCCCTCAAGCGAAGAGGAAGACCTAGCGAATTGCTTAATGATGTTGTCCAATGCGATTGTGGACCCTCTGACGTCAGCCGCGGCCGAGCCAGAAGAGTCTTGCGCCTCGGCGAGCAGAGAGGAGGAGCAAAGAAGAAACCCTATGAACTTTGTTGCACCATTCTCTTCTTATAAAGTTCCAAACAACGATAACAACAATAACAATAACAACAAGGCCAAAGGTGTTGCTAAGGGTTTGTTTGAATGCAAAGCGTGCAAGAAGGTTTTCAACTCGCACCAGGCGTTGGGTGGCCACAGAGCTAGCCACAAGAAGGTTAAGGGCTGCTTTGCGGCGAGGCTGGACAATCTGGACGACAGCCTCGCCGACGATGACGTCATGACACACGAAGAATTCTTCCCTACAAAATCAAACTCAACATTCCAATTTGATCAAAACCCTCACCATAACTCAGCCACATTGGCCTCATCATCAAAGAGGAAATCAAAGGTTCATGAATGCTCCATTTGCCATAGAAGCTTCTCCTCAGGACAAGCATTGGGAGGCCACAAAAGGTGCCATTGGATCACATCAAATGCACCGGACACTTCCACATTGGCTAGGTTTCAACAATTTCAGGAACATTTGGATCAAATACCAAAGTTTGATGGATCTTCTGAGCCTCTTGATCTCAAACTTGACCTCAACCTTCCTGCACCAACCAATGATCTTTCTAGAAGGAATAACAATGTTAATGTTTCCACAGAAATCTTCTTGCAGCCATGGGTAGGAGGAGCAGGAGGAGGAACCGCCACAAAGGAAAACAATACAAACATGAAAGATGATAGCAACAATAATAACAACAATAGCCAGAGTCAAATTAGTCACCAGCACCCCACCAACCATAACCAAATTGATCATAATGAAAATGTTGGTGTTGATGGGGACAAGAATAATAGTAACCCCAACAACAACAACAACAATAACAATGATTTGATGCAAAGTGTGGATAATGAAGCTGATAGTAAGATCAAGCTAGCAAAACTTAGTGAGCTAAAGGATATGAACATTGGTGGCACTTCTTCACCATGGTTGCAGGTTGGAATTGGTTCAACAACTACTGATGTTGGCACCGATCAGTAA 1572 0.4447 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAADDGIEPTRRGCGWSKRKRSLRAKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLTSAAAEPEESCASASREEEQRRNPMNFVAPFSSYKVPNNDNNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDSLADDDVMTHEEFFPTKSNSTFQFDQNPHHNSATLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQEHLDQIPKFDGSSEPLDLKLDLNLPAPTNDLSRRNNNVNVSTEIFLQPWVGGAGGGTATKENNTNMKDDSNNNNNNSQSQISHQHPTNHNQIDHNENVGVDGDKNNSNPNNNNNNNNDLMQSVDNEADSKIKLAKLSELKDMNIGGTSSPWLQVGIGSTTTDVGTDQ* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2249 523 MobiDBLite consensus disorder prediction 405 477 - -
Ahy12g2249 523 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Ahy12g2249 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Ahy12g2249 523 MobiDBLite consensus disorder prediction 288 307 - -
Ahy12g2249 523 MobiDBLite consensus disorder prediction 108 130 - -
Ahy12g2249 523 MobiDBLite consensus disorder prediction 38 54 - -
Ahy12g2249 523 Pfam C2H2-type zinc finger 314 339 - -
Ahy12g2249 523 Pfam C2H2-type zinc finger 13 35 - -
Ahy12g2249 523 Pfam C2H2-type zinc finger 231 255 - -
Ahy12g2249 523 ProSitePatterns Zinc finger C2H2 type domain signature. 317 337 IPR013087 -
Ahy12g2249 523 SUPERFAMILY beta-beta-alpha zinc fingers 230 337 IPR036236 -
Ahy12g2249 523 MobiDBLite consensus disorder prediction 38 59 - -
Ahy12g2249 523 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Ahy12g2249 523 PANTHER OS02G0659100 PROTEIN 1 520 - -
Ahy12g2249 523 MobiDBLite consensus disorder prediction 413 477 - -
Ahy12g2249 523 SMART c2h2final6 231 253 IPR013087 -
Ahy12g2249 523 SMART c2h2final6 13 35 IPR013087 -
Ahy12g2249 523 SMART c2h2final6 315 337 IPR013087 -
Ahy12g2249 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 315 337 IPR013087 -
Ahy12g2249 523 Gene3D Classic Zinc Finger 11 104 - -
Ahy12g2249 523 PANTHER OS02G0659100 PROTEIN 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2249 Ahy-Chr12 109164529 109166587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2249 135 380 C2H2 Transcription Factor Family AT1G02040 33.463 3.29e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g2249 zf-C2H2_6 1.70E-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2249 12 109164529 109166587 Ahy12g2249 12 109164529 109166587 ECH
Ahy12g2249 12 109164529 109166587 Ahy2g1941 2 93636672 93638314 hybridization