Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2246 ATGGCTCGTCTCTACTTTTGCTCAACCACTACAGGAGGTAGCTACTGTAGCTACGTGGAGGATGAGGCAGAAGATAAGAGCAGGAGGAGCTGTCAAGTAATCAAGGACTCATCAAGGGTTAGGAATCCTTCTTGGGGAGCAAGTCAAGATGGAAGGCCCAGATTGATGAAGTTTGGTGAGAAGGGAAGACCCAGAGGTGGTGCATGTAATTATGGTAAAACTGTAGAGAGTCCTCCGATCTCTAAATTAACCGTGGCGGCTGGTAATTTTATTTTTCGCAAGGGCTATGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGAAAGTCCGTGACGGTGGTGGTAAGTGATGAATGCTCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGGAATTTTGTAGCAGTGAGGATCGGTGAAAACTCTAGACCACCAACTTACATGGAAGCATCAATCGAATATGTAAATGGAGATGCAGAATACATTGATTTAGAAGTTCGTGATCAAAGTTTTCTTACCGTTTCTCGTGTGGGGGGTGCAACATGGAGTTTCTTTTTCGCCGGTTATAATTTGCAACCTCCAATGACTTTAACGCTCACTCAACGTTATTCCAATGGCACCAAAGGAAATACCATTCAACTTCCTAATATCATCCCAATTGATTGGAAGATTGGTCAAGTTTATCAATCAAAGACAAATTTCTAG 822 0.4307 MARLYFCSTTTGGSYCSYVEDEAEDKSRRSCQVIKDSSRVRNPSWGASQDGRPRLMKFGEKGRPRGGACNYGKTVESPPISKLTVAAGNFIFRKGYGCGSCYEVKCTDNAACSGKSVTVVVSDECSSCSGYHFNLSGAAFASIANPGQQDTLRKLGQVNLQYRRVSCSFGNFVAVRIGENSRPPTYMEASIEYVNGDAEYIDLEVRDQSFLTVSRVGGATWSFFFAGYNLQPPMTLTLTQRYSNGTKGNTIQLPNIIPIDWKIGQVYQSKTNF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2246 273 Pfam Lytic transglycolase 89 161 IPR009009 -
Ahy12g2246 273 Gene3D - 172 273 IPR036749 -
Ahy12g2246 273 Pfam Expansin C-terminal domain 173 258 IPR007117 -
Ahy12g2246 273 PRINTS Major pollen allergen Lol pI signature 144 159 IPR005795 GO:0005576|GO:0019953
Ahy12g2246 273 PRINTS Major pollen allergen Lol pI signature 192 207 IPR005795 GO:0005576|GO:0019953
Ahy12g2246 273 PRINTS Major pollen allergen Lol pI signature 245 262 IPR005795 GO:0005576|GO:0019953
Ahy12g2246 273 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Ahy12g2246 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 172 IPR007112 -
Ahy12g2246 273 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
Ahy12g2246 273 Gene3D - 31 168 IPR036908 -
Ahy12g2246 273 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Ahy12g2246 273 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Ahy12g2246 273 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Ahy12g2246 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Ahy12g2246 273 PANTHER EXPANSIN-LIKE PROTEIN B1 64 273 - -
Ahy12g2246 273 SUPERFAMILY Barwin-like endoglucanases 64 169 IPR036908 -
Ahy12g2246 273 PANTHER EXPANSIN-B3 64 273 - -
Ahy12g2246 273 SMART dpbb_1 84 162 IPR007112 -
Ahy12g2246 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 269 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2246 Ahy-Chr12 109125963 109138443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2246 66 273 Expansin Gene Family AT1G65680 37.209 6.80e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2246 - - aip:107627770 310.457