Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2245 ATGAAGGTTCACACATGTACTCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTAGTTGTTATTGCATCAACCCCAAATTTTTCAATCCTTCCAAAGTTGCAAATGATGAGAAACTATGGAACCAAACACAAGCTACATGGCATGGAACCCCTGATGGTGCTGGATCAGATAATGGTGCATGTAATTACGGTAAAACTGTGGAGAGTCCTCCAATCTCTAAATTGACAGCGGCTGCTGGTAGTTCTATTTTTCGCAAAGGCTATGGATGTGGTTCTTGTTATGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGTCAGTGACGGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGTCGCTTTTGCTTCCATCGCAAATCCAGGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGGAATTCTATAGCAGTGAGGATCGGTGAAAACTCTAGACCACCAACTTACATGGAAGCATCAATCGAATACGTAAATGGAGATGCAGACTACATTGATTTAAAAGTTCGTGATCAAAGTTTCCTTACTGTTTCTCGTTTGGGGGGTGCAACATGGAGTTTCTTTTTTGCTGGTTATAATTTGCAACCTCCAATGACTTTAACACTCACTCAACGTTATTCCAATGGCACCAAAGGAAAGACCATTCAACTTCCTAATATCATCCCAGTTGATTGGAAGATTGGTCAAGTTTATCAATCAAAGACAAATTTTTAG 798 0.4073 MKVHTCTLVVLCSMLLSTSCYCINPKFFNPSKVANDEKLWNQTQATWHGTPDGAGSDNGACNYGKTVESPPISKLTAAAGSSIFRKGYGCGSCYEVKCTDNAACSGKSVTVVVSDECPSCSGYHFNLSGVAFASIANPGQQDTLRKLGQVNLQYRRVSCSFGNSIAVRIGENSRPPTYMEASIEYVNGDADYIDLKVRDQSFLTVSRLGGATWSFFFAGYNLQPPMTLTLTQRYSNGTKGKTIQLPNIIPVDWKIGQVYQSKTNF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2245 265 PANTHER EXPANSIN-LIKE PROTEIN B1 6 265 - -
Ahy12g2245 265 SUPERFAMILY PHL pollen allergen 164 261 IPR036749 -
Ahy12g2245 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 164 IPR007112 -
Ahy12g2245 265 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ahy12g2245 265 Gene3D - 163 265 IPR036749 -
Ahy12g2245 265 SMART dpbb_1 76 154 IPR007112 -
Ahy12g2245 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Ahy12g2245 265 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Ahy12g2245 265 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Ahy12g2245 265 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Ahy12g2245 265 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Ahy12g2245 265 Pfam Expansin C-terminal domain 165 250 IPR007117 -
Ahy12g2245 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 261 IPR007117 -
Ahy12g2245 265 Gene3D - 26 160 IPR036908 -
Ahy12g2245 265 PANTHER EXPANSIN-B3 6 265 - -
Ahy12g2245 265 SUPERFAMILY Barwin-like endoglucanases 40 161 IPR036908 -
Ahy12g2245 265 Pfam Lytic transglycolase 77 153 IPR009009 -
Ahy12g2245 265 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Ahy12g2245 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Ahy12g2245 265 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Ahy12g2245 265 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Ahy12g2245 265 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2245 Ahy-Chr12 109118083 109121461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2245 21 265 Expansin Gene Family AT1G65680 38.492 1.17e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2245 - - ahf:112728471 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2245 12 109118083 109121461 Ahy12g2245 12 109118083 109121461 ECH
Ahy12g2245 12 109118083 109121461 Ahy2g1939 2 93612149 93615096 hybridization
Ahy16g2723 16 139770158 139773737 Ahy12g2245 12 109118083 109121461 PCT
Ahy6g2339 6 106815890 106819927 Ahy12g2245 12 109118083 109121461 PCT
Ahy12g2245 12 109118083 109121461 Ahy16g2723 16 139770158 139773737 PCT
Ahy12g2245 12 109118083 109121461 Ahy6g2339 6 106815890 106819927 PCT