Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2243 ATGATACATTACTACAGTTGCAAAAACTATCATCAATTCATCATGAAGGTTCACACATTTAATCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACCCCCGATGGTGCTGGTTCAGATAGTGGTGCATGTAGTTATGGTAAAACTGTGGAGAGTCCTCCAATTTCTAAATTGACAGCGGCTGTAGGCCATTATATTTTTCGTCAAGGTTATGGATGTGGTGCTTGTTACGAGGTGAAATGCACAGATAATGCAGCATGTTCAGGGAAGCCAGTGACAGTGGTGGTAAGTGATGAATGCCCATCGTGTTCAGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCATTGCAAATCCAGGTCAACAAGATATTCTTCGTAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGACGTTCTATAGCATTTAGAATGGGTGAAAATTCTGAACCAAATAAATTAGAAGTATCAATGGAATACGTAAATGGAGATGCAGATATTCATATAGAAAATGGTCCTGAACAAGGTTTAGAGATTTCTCATGTGTGGGGTGCAACTTGGAGTGTTTTTGCTGGTGGTTATGCTATACAACCTCCATTCAATTTTACACTCGTTCAACGTTATCCCGATGGCACCAAAGGAAAGACCATTCTGGTTCCTAATATATTCACACAGGATTGGAAGATCGGTCAAGTTTATCAATCAACGATAAATTTCTAG 834 0.3945 MIHYYSCKNYHQFIMKVHTFNLVVLCSMLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSDSGACSYGKTVESPPISKLTAAVGHYIFRQGYGCGACYEVKCTDNAACSGKPVTVVVSDECPSCSGYHFNLSGAAFASIANPGQQDILRKLGQVNLQYRRVSCSFGRSIAFRMGENSEPNKLEVSMEYVNGDADIHIENGPEQGLEISHVWGATWSVFAGGYAIQPPFNFTLVQRYPDGTKGKTILVPNIFTQDWKIGQVYQSTINF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2243 277 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Ahy12g2243 277 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Ahy12g2243 277 PRINTS Major pollen allergen Lol pI signature 112 122 IPR005795 GO:0005576|GO:0019953
Ahy12g2243 277 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Ahy12g2243 277 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Ahy12g2243 277 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Ahy12g2243 277 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Ahy12g2243 277 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Ahy12g2243 277 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ahy12g2243 277 Pfam Lytic transglycolase 91 167 IPR009009 -
Ahy12g2243 277 Gene3D - 41 174 IPR036908 -
Ahy12g2243 277 SMART dpbb_1 90 168 IPR007112 -
Ahy12g2243 277 PANTHER EXPANSIN-LIKE PROTEIN B1 20 277 - -
Ahy12g2243 277 SUPERFAMILY PHL pollen allergen 177 273 IPR036749 -
Ahy12g2243 277 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 273 IPR007117 -
Ahy12g2243 277 SUPERFAMILY Barwin-like endoglucanases 53 175 IPR036908 -
Ahy12g2243 277 Gene3D - 175 277 IPR036749 -
Ahy12g2243 277 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 178 IPR007112 -
Ahy12g2243 277 PANTHER EXPANSIN-B3 20 277 - -
Ahy12g2243 277 Pfam Expansin C-terminal domain 179 256 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2243 Ahy-Chr12 109051743 109055305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2243 35 277 Expansin Gene Family AT1G65680 40.239 4.05e-65 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2243 - - ahf:112728471 461.84