Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2242 ATGATACGTTACTACAGTTGCAAAAACTATCATCAATTCATCATGAAGGTTCACACATTTAATCTTGTAGTCCTTTGTTCTATGCTTTTAAGCACTACTTGCTATTGCATCAACCCCAAATTTTTCAATCCTTCAAAAGTTCCAAATGATGAAAAACCATGGGACCAAACACAAGCTACATGGTATGGAACGCCGGACGGAGCTGGATCAGAGAGTGGTGCATGTAAATATGGTAAAACTGTGGAGAATCCTCCAATCTCTAAATTGACGGCGGCTGCTGGCCATTATATTTTCCGCCAGGGCTATGGATGTGGTGCTTGTTATGAGGTGAAATGCACAGATAATCCAGCATGTTCAGGGAAGTCAGTGACAGTGGTGGTAAGTGATGAATGCCCATGGTGTTCGGGATACCATTTCAATCTCAGTGGCGCCGCTTTTGCTTCCCTCGCAAATCCAAGTCAACAAGATACTCTTCGCAAACTTGGACAAGTCAACCTTCAATACAGAAGGGTTTCATGCTCATTTGGAGATTCTATAGCATTTATGGTCGGTGAAAAATCTAGATCAGAGTATTTGGAAGTATCAATGGAATACGTAAATGGAGATGCAGATGTTCATATAGAAAATACTATAAGTTTCGATAACATTTCTCATGTGTGGGGTCCAACTTGGAGTGTTTTTGCTGGTGGTTATGATCTACAACCTCCATTCAATTTTACACTCGCTCAACATTATCCCAATGGCATCAAAGGAAAGACCATTATAATTCGTGATATGATCCCAAAGGATTGGAAGATCGGTCAAGTTTATCGATCAAAGATAAATTTTTAG 831 0.4007 MIRYYSCKNYHQFIMKVHTFNLVVLCSMLLSTTCYCINPKFFNPSKVPNDEKPWDQTQATWYGTPDGAGSESGACKYGKTVENPPISKLTAAAGHYIFRQGYGCGACYEVKCTDNPACSGKSVTVVVSDECPWCSGYHFNLSGAAFASLANPSQQDTLRKLGQVNLQYRRVSCSFGDSIAFMVGEKSRSEYLEVSMEYVNGDADVHIENTISFDNISHVWGPTWSVFAGGYDLQPPFNFTLAQHYPNGIKGKTIIIRDMIPKDWKIGQVYRSKINF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2242 276 Pfam Lytic transglycolase 92 167 IPR009009 -
Ahy12g2242 276 SMART dpbb_1 90 168 IPR007112 -
Ahy12g2242 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 272 IPR007117 -
Ahy12g2242 276 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Ahy12g2242 276 PRINTS Major pollen allergen Lol pI signature 248 265 IPR005795 GO:0005576|GO:0019953
Ahy12g2242 276 PRINTS Major pollen allergen Lol pI signature 112 122 IPR005795 GO:0005576|GO:0019953
Ahy12g2242 276 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Ahy12g2242 276 PRINTS Major pollen allergen Lol pI signature 181 196 IPR005795 GO:0005576|GO:0019953
Ahy12g2242 276 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Ahy12g2242 276 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Ahy12g2242 276 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Ahy12g2242 276 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Ahy12g2242 276 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Ahy12g2242 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 178 IPR007112 -
Ahy12g2242 276 Gene3D - 41 174 IPR036908 -
Ahy12g2242 276 PANTHER EXPANSIN-LIKE PROTEIN B1 20 276 - -
Ahy12g2242 276 SUPERFAMILY Barwin-like endoglucanases 53 175 IPR036908 -
Ahy12g2242 276 Gene3D - 175 276 IPR036749 -
Ahy12g2242 276 PANTHER EXPANSIN-B3 20 276 - -
Ahy12g2242 276 Pfam Expansin C-terminal domain 179 261 IPR007117 -
Ahy12g2242 276 SUPERFAMILY PHL pollen allergen 178 272 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2242 Ahy-Chr12 109035381 109042112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2242 35 276 Expansin Gene Family AT1G65680 38.645 2.62e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2242 - - ahf:112728471 509.22