Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2218 ATGGAGTCAAGGAGCTGCATGAACGTGGTATGCGCCACCTTGACGTCGATTCAATGGCGCAAAGGTTGGGCCTTGCGATCCGGCGAATTTGCCGATCTCTGTGATAAGTGCGGTTCTGCATATGAGCAATCAACATTTTGTGAAAAATTCCACTCAAATGATTCTGGTTGGAGAGAGTGTGTTTCATGTGGCAAGCGTCTACATTGTGGATGCATTGCCTCTAGGTCTCAGCTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAACTTGTTGCGGGTACTGAAAAGCCTACTGGCTCTGGGGCATCAAAGATAAAGAACGTCAGTGAACAACTGTGTCCATCTCTGGCTAACCAATTAAATGTCAGGGGTATGCAAGTAGGACATTCCACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCTGATGCAAATGTCCCTTTTCCAGAGATAAAAACAGAGGAAGGTTTGCCTTCTACTGCAGAACTTGGAAGCCAATTGATATCACAATTTCGCTGCAAATCTAATGGTTCATCTAGGGTTGCCAAATCAGACAACTGCCAGGCAGATATGGAGATGCAAGATATATATGAATCATTGGCACATGCAAATTTGAGTATGACTCTTGCTTCTCCTTCAGGAAATCCAAATCCCTTTCATAGTGCCATTGCTGATGAAAGGGAACAAAGTAAAACCTCGCCTCCACTTTTACTTGGGTCTAGGTCTCGCCACCTTTTACCAAAGCCTCCTAGGTCAAGCCTTGGTTCAAGCTTAGAAACAAATGCAGCTATGGTGTCCCAAATCCGTGTAGCAAGGCCTCCTGCCGAGGGACGTGGAAGAAATCAGCTACTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAACAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTCCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGTGTAACTCCTTGTATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGGATGGACCCTGAAGGGAAACTTATTATGGGGTTTAGGAAGGCAACAAATTCTGCTGCAGTACAGTCACAAAAGGGAAGTTCAGAATCCCCGCTAAATACGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATTCCTGAAAAAAGGACAAGGGAGGGATCATTTTTGCCGCCTGTGCTGGTTCCAGAGAAGAAAAAAACCAGGAATATTGGATCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCGCTGGAGTTGAAGCTTACATGGGAAGAGGCACAGGATTTGCTTCGTCCTCCTCCAACTGCTAAACCAAGCATTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAGAAGAGTATATTCGTAGCCCGCTCTGCTGGGATAAATGAGCAGTGGACACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCCCCTAAGTGGACATGTGCTGATAACTTGTGGGATCAGAGCAGGCGTGCATGTTCTGCTCCAGACGAATTGAGCCCAAGGGAGATGGATAATCTCTTGCGACTGATCAAGGAATTCAAGAAACAGCGAATGACTGCCAGCCAAAGACCAACCTTAGAACATGAATCTTCCGGATTGGATGCTTTGGCAAATGCTGCAATACTTGGAGATGATGCAGGTGACCCTAGCAGAGCACCAGTTGCTGCCACTACGAAGCACCCTCGGCATAGACCTGGTTGCTCCTGTATTGTATGTATCCAACCACCGAGTGGGAAGGGCAAGCACAAACCTACATGCACCTGTAACGTGTGCATGACAGTAAAACGTAGGTTTAAAACCCTTATGATGCGAAAGAAGAAGCGGCAATCTGAGCGTGAAGCAGAGATTGCTCAGAGAAATCAGCAGTCATGGGTGACCAAGGATGAATCTGAAGTAGAAAGCACCTCTCAGCATTTAACTCGAGGTGATGGTTCGGAGAATGAAGCAAGGGTGCCAAACGAGTTAGATTCAAGGAGTCAAGACCATGCGGATGATGCAGCCAAGGGACACTTAGATTTGAACTGCCAACCTGATCGAGAAGATGCTCAAGCTGGGACAAACAGCATGAGCATGATGAGTCTTCTTGAAGAAGCAAATCTGCCATTGGAGACCTACCTGAAGAAAAATGGTCTTACTAGCTTGATGTCAGAACAGGAAACAAATTCAGCCTCAAATATGCAGGCACAGACGACCAATGACAGTGAGGGAAAACAAAATGAGGATTGTTGTACTCCTTCTGCTGTTCAGGAGCAGGAAAGCAGTCCCGAAGAGAGCAGTGAGCAAGACAAAGGCCAAAACAATTCATGA 2613 0.4501 MESRSCMNVVCATLTSIQWRKGWALRSGEFADLCDKCGSAYEQSTFCEKFHSNDSGWRECVSCGKRLHCGCIASRSQLELLDSGGVSCINCTRNSGHQLVAGTEKPTGSGASKIKNVSEQLCPSLANQLNVRGMQVGHSTDSDGLRWWLKPHNPDANVPFPEIKTEEGLPSTAELGSQLISQFRCKSNGSSRVAKSDNCQADMEMQDIYESLAHANLSMTLASPSGNPNPFHSAIADEREQSKTSPPLLLGSRSRHLLPKPPRSSLGSSLETNAAMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQSQKGSSESPLNTLSKKWNSAGGDMNWHNIEIPEKRTREGSFLPPVLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTAKPSIVMIEDHVFEEYEEPPVFGKKSIFVARSAGINEQWTQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSRRACSAPDELSPREMDNLLRLIKEFKKQRMTASQRPTLEHESSGLDALANAAILGDDAGDPSRAPVAATTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWVTKDESEVESTSQHLTRGDGSENEARVPNELDSRSQDHADDAAKGHLDLNCQPDREDAQAGTNSMSMMSLLEEANLPLETYLKKNGLTSLMSEQETNSASNMQAQTTNDSEGKQNEDCCTPSAVQEQESSPEESSEQDKGQNNS* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2218 870 MobiDBLite consensus disorder prediction 704 765 - -
Ahy12g2218 870 ProSiteProfiles B3 DNA-binding domain profile. 323 424 IPR003340 GO:0003677
Ahy12g2218 870 Gene3D - 301 428 IPR015300 -
Ahy12g2218 870 Coils Coil 605 625 - -
Ahy12g2218 870 ProSiteProfiles Zinc finger CW-type profile. 552 602 IPR011124 GO:0008270
Ahy12g2218 870 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 824 - -
Ahy12g2218 870 MobiDBLite consensus disorder prediction 238 269 - -
Ahy12g2218 870 Pfam CW-type Zinc Finger 557 599 IPR011124 GO:0008270
Ahy12g2218 870 Pfam B3 DNA binding domain 323 422 IPR003340 GO:0003677
Ahy12g2218 870 SMART B3_2 323 423 IPR003340 GO:0003677
Ahy12g2218 870 MobiDBLite consensus disorder prediction 646 665 - -
Ahy12g2218 870 MobiDBLite consensus disorder prediction 718 732 - -
Ahy12g2218 870 MobiDBLite consensus disorder prediction 745 765 - -
Ahy12g2218 870 MobiDBLite consensus disorder prediction 817 870 - -
Ahy12g2218 870 CDD B3_DNA 321 422 IPR003340 GO:0003677
Ahy12g2218 870 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 824 - -
Ahy12g2218 870 Gene3D - 555 611 - -
Ahy12g2218 870 SUPERFAMILY DNA-binding pseudobarrel domain 320 423 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2218 Ahy-Chr12 108487790 108496557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2218 1 823 B3 DNA Binding Superfamily AT4G32010 52.842 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy12g2218 B3 2.20E-15 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2218 12 108487790 108496557 Ahy12g2218 12 108487790 108496557 ECH
Ahy12g2218 12 108487790 108496557 Ahy2g1926 2 93203731 93211707 hybridization