Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2207 ATGGCTATTTCACCGCAAACTTTCCCTCCCAGAAAACGACGACCCTCAGCAGGGTCGTTTATCTCGCCGAAGCTAAACGACATCAACCTCCTCCACTCCCTCCTCCATCTAACGACACAAATAAGTTCCATAAACCGTTCAACGACACTGCTTCTGCTTAAACGCAGCGCCAATGCTGTCGTTCGCAAGGCGAAGCTACTCGCCGTTCTATTCGAGGACCTAATACGAAATTCCGATTCTGGCCTCACTTCTTCTTCTTCTTCGTCATCGTTTCTCCTCTGCCTGGAAGAGACATACATCGTTCTGCACCGAATCAAAACCCTAATTGAAGATTGCTCCAACGGAAGCAAGTTCTTCTTCCTCATGCAAATCGAAACCGTCGCCGACAACTTCCACAAACTTACCGGAGAACTCTCCACGCTCCTTGACATCTTCCCGGTACACGACCTAGACCTGAACGACGACGTTCAGGAGCTCGTGGTTCTAATCAGAAAACACTGCTTGCAATCGAAACCGGTGATAGAGGATTCAGAAACAGAGCTCCGAAACGAGGTGGTTTCGGTGCTCGAGAGTATCAAGAACGAGATCGTACCTGACCGGAGCAAACTCGCTTCGATCTTCGAGAGGTTGGAGATTCGCGATTCGTCGAGCTGCAGGGCAGAGATTGAGTGCTTGGAGGAGGAGATCCAGAATCGGAGCGAGGAGAATTCCAAGTCTGAGATCGTCGCCTTGATCGGTCTCGTTCGCTACGCAAAGTGCGTCCTCTTCGGCGCTTCAACCGCCGCCGCGGCGTCTTCTTCAGTGGAGGTTCAACGGCGGAAACAGCCGTCGGAGTTAGTTGTTCCGGCGGACTTCCGGTGTCCTATAAGCCTCGAGCTCATGCGTGATCCCGTCGTCGTGGCGACAGGGCAGACGTACGATCGTGAATCGATCAAGCTCTGGATGGATTCTGGACACAACACGTGTCCAAAAACGGGTCAGACCTTGGCCCACACAGAACTCATACCAAATCGCGCGTTGAGAAACATGATAGCATTGTGGTGCCGCGAGCAGAAGATTCCCTTCGATGCAGAAACCGTTACCGGAAGGCCTATAAGCCGCGTAACAAACAAGGCCGCGCTTGAAGCCACGCGCATGACGGCGTTGTTTCTGGTCAACAAACTCAAGGTCCCTATAACTAACTCTCAGTCTATGGAGGACTCAAACGCCGTCGTTTACGAGCTTCGTTTTCTGGCCAAAACAGACTCGGATAGCCGAGCCTGCATCGCGGAAGCTGGAGCCATCCCGCTTTTGGTTCGGTATCTCAGCTTCGACGTTGGGGTTCATAGTCCAAGCCTGCAGGTTAACGCCGTTACTACGATATTGAACCTTTCAATATTGGAGGCGAACAAAACGAGGATAATGGAGACTGACGGCGCACTTAACGGAGTTGCGGAGGTTTTGCGTTCGGGTGCCACGTGGGAAGCTAAGGCAAATGCAGCGGCCACGGTGTTCAGTTTGTCAGGTGTTCCAGCTTATAGAAAGAGACTTGGAAGGAAGACACGTGTTGTGAATGGATTGGTCCAGTTGGCAAGATGTGGACCCGAGGGACCCAGGAGGGATGCATTGGCGGCAATTCTGAGTTTGGCGGCGGATAGAGAAAGCGTGGCAAAGTTAGTGGAGGGCGGCGCGGTGGAGATGGCGGTGGAGGTGATGGTGGCCGTACCGGAGGAGGCGGCAACTGTGTTGGAGGCCGTGATTAAGCGCGGTGGGTTCGTGGCCGTGGCAGCGGCATACAATGGGATCAAGAGGCTGGGAGCAGTGTTAAGAGAAGGTTCAGAGAGGGCAAGGGAAAGCGCCGTGGCGACATTGGTGACAATGTGCCGGAAAGGGGGGTCGGAAGTGGTGGGGGAGTTGGCGGCCATTCCAGGGGTAGAGAGAGTAATTTGGGAGATAATGGCAGTTGGAAGCGTCCGGGGGAGGAGAAAGGCGGCAACATTATTGAGAATCCTACGCCGGTGGGCGGCCGGGTTAGATGGCGTAGAGATAGAAGGGTTTTCAACAACCACCATGTCTTCCGCAACCACTGTGGTGGTTCCAACTTCCAATTCAGTAGCGCAGTAA 2103 0.5354 MAISPQTFPPRKRRPSAGSFISPKLNDINLLHSLLHLTTQISSINRSTTLLLLKRSANAVVRKAKLLAVLFEDLIRNSDSGLTSSSSSSSFLLCLEETYIVLHRIKTLIEDCSNGSKFFFLMQIETVADNFHKLTGELSTLLDIFPVHDLDLNDDVQELVVLIRKHCLQSKPVIEDSETELRNEVVSVLESIKNEIVPDRSKLASIFERLEIRDSSSCRAEIECLEEEIQNRSEENSKSEIVALIGLVRYAKCVLFGASTAAAASSSVEVQRRKQPSELVVPADFRCPISLELMRDPVVVATGQTYDRESIKLWMDSGHNTCPKTGQTLAHTELIPNRALRNMIALWCREQKIPFDAETVTGRPISRVTNKAALEATRMTALFLVNKLKVPITNSQSMEDSNAVVYELRFLAKTDSDSRACIAEAGAIPLLVRYLSFDVGVHSPSLQVNAVTTILNLSILEANKTRIMETDGALNGVAEVLRSGATWEAKANAAATVFSLSGVPAYRKRLGRKTRVVNGLVQLARCGPEGPRRDALAAILSLAADRESVAKLVEGGAVEMAVEVMVAVPEEAATVLEAVIKRGGFVAVAAAYNGIKRLGAVLREGSERARESAVATLVTMCRKGGSEVVGELAAIPGVERVIWEIMAVGSVRGRRKAATLLRILRRWAAGLDGVEIEGFSTTTMSSATTVVVPTSNSVAQ* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2207 700 Gene3D - 383 590 IPR011989 -
Ahy12g2207 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 472 IPR000225 GO:0005515
Ahy12g2207 700 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Ahy12g2207 700 Pfam Armadillo/beta-catenin-like repeat 416 458 IPR000225 GO:0005515
Ahy12g2207 700 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Ahy12g2207 700 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Ahy12g2207 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 358 IPR013083 -
Ahy12g2207 700 SUPERFAMILY ARM repeat 392 664 IPR016024 -
Ahy12g2207 700 Coils Coil 215 242 - -
Ahy12g2207 700 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 681 - -
Ahy12g2207 700 SUPERFAMILY RING/U-box 280 354 - -
Ahy12g2207 700 PANTHER U BOX DOMAIN-CONTAINING 11 681 - -
Ahy12g2207 700 CDD RING-Ubox_PUB 285 327 IPR045210 -
Ahy12g2207 700 SMART arm_5 415 459 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2207 Ahy-Chr12 108210694 108213169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2207 9 698 U-box Gene Family AT5G01830 55.123 0.0 711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g2207 12 108210694 108213169 Ahy12g2207 12 108210694 108213169 ECH
Ahy12g2207 12 108210694 108213169 Ahy2g1916 2 93001859 93004308 hybridization