Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy12g2130 | ATGCCTGAAATACAGATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTACGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGAGAATTGCAACCTAATTTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAGTTTGCGTCAAAGCTTCGTAAACATGAAGATTCTCATGTTAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTTGCACACATGAAGCTGACAAATCATTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGTAAATCTAATCTCGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAGCCCTTTGTATGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACAGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAAGAGTGA | 1092 | 0.4029 | MPEIQMDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCTVDDCQASYRRKDHLTRHLLQHEGKTFKCPMENCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPEIGCGKVFKFASKLRKHEDSHVKLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLCTHEADKSLAEFKCEFKGCSCKFSSKSNLVTHKKAVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQE* | 364 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy12g2130 | 363 | Pfam | Zinc finger, C2H2 type | 97 | 121 | IPR013087 | - | |
| Ahy12g2130 | 363 | Pfam | Zinc finger, C2H2 type | 165 | 189 | IPR013087 | - | |
| Ahy12g2130 | 363 | Pfam | Zinc finger, C2H2 type | 70 | 91 | IPR013087 | - | |
| Ahy12g2130 | 363 | SUPERFAMILY | beta-beta-alpha zinc fingers | 236 | 291 | IPR036236 | - | |
| Ahy12g2130 | 363 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 165 | 194 | IPR013087 | - | |
| Ahy12g2130 | 363 | Gene3D | Classic Zinc Finger | 162 | 226 | - | - | |
| Ahy12g2130 | 363 | Gene3D | Classic Zinc Finger | 14 | 96 | - | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 128 | 151 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 257 | 280 | IPR013087 | - | |
| Ahy12g2130 | 363 | Gene3D | Classic Zinc Finger | 122 | 161 | - | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 288 | 312 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 69 | 91 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 126 | 151 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 165 | 189 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 97 | 121 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 24 | 47 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 197 | 222 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 255 | 280 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 286 | 312 | IPR013087 | - | |
| Ahy12g2130 | 363 | SMART | c2h2final6 | 225 | 246 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 71 | 91 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 69 | 96 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 126 | 156 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 255 | 285 | IPR013087 | - | |
| Ahy12g2130 | 363 | PANTHER | - | 12 | 354 | - | - | |
| Ahy12g2130 | 363 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 126 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 121 | IPR013087 | - | |
| Ahy12g2130 | 363 | PANTHER | ZINC FINGER PROTEIN | 12 | 354 | - | - | |
| Ahy12g2130 | 363 | Gene3D | Classic Zinc Finger | 249 | 328 | - | - | |
| Ahy12g2130 | 363 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 129 | IPR036236 | - | |
| Ahy12g2130 | 363 | Gene3D | Classic Zinc Finger | 97 | 121 | - | - | |
| Ahy12g2130 | 363 | SUPERFAMILY | beta-beta-alpha zinc fingers | 124 | 152 | IPR036236 | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 167 | 189 | IPR013087 | - | |
| Ahy12g2130 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 199 | 222 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy12g2130 | Ahy-Chr12 | 106601428 | 106606416 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy12g2130 | 93 | 315 | C2H2 Transcription Factor Family | AT1G72050 | 51.449 | 1.38e-91 | 276 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Ahy12g2130 | zf-C2H2 | 0.00085 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy12g2130 | K09191 | - | gmx:100801812 | 559.296 |