Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2032 ATGAAGGATCTTATTCATGGGAGTACTGTGTGCCTGATGTTATTTGGAATGTGCTTTCTTTTTTTTCATAGTATTATGGCTGTTATAACCACAACAAGGAGGAGTGAACGTTTCCGGCGAACAACACCACCGACATGTACGTATTGGCTAGCTGGGAGATGCAACCGAAATCCTTGTAGATTTTCGCATAGCTCACCAACATTGCCATCGAATGCATACTATAATGGCAATACCACATATAAGCATTCAAAGCAACCAACAAATTGCGCATCGAAGGCCCTCGAGAAGCCAGCAAATCGTGCACCAATGGCTGTTGTGTCTGTTGAGAAGCCAACCAAGTGTGAACCAATGGCTATGTCTGATGAGAAGATTACAGTGTGTGGACTAGAGGCTGTGTCCGTTGAGAAGCCAACCAAGTGTGAACAAAAGGCTGTATTAATTGAAAAGACCGCAGATGTGGAAGATGTGGACACTGTTGTTGCTAAGGCTCCTGTGGAGAAATCACGAAGTATTTGTAAATATTGGATGACTGACACTTGTGTGCATGGTGACCTGTGCCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGAAGGCTGTAACCGGGATTGCATTGCCGGCTGGTTCGGACAAACTTTATTCTGGCAGCACTGATGGCACAGTTCGAGCCTGGGACTGCAACACTGGCCGCTGTCTTGGTGTGATAAACCTTAATTCTGAAGTTACCTCGTTGGTATCTGAGGGCTCATGGATATTTGCCGGTGTGAAGAATGCTGTGAAGGCATGGAATATTCAAACCGGTGCAGATTTTACTCTTGATGGACCTATGGGGCAAGTCCTGTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGAGTCAGCTCTGATCCCAAAGCTGAGTCTCCTTTCGAACTGGTTGCAACACTGAGTGGTCATACTAAACCGGTGGTTTGTCTTGCTATTGGATGCTACAAGATGCTTTATTCTGGGTCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTACAGTGCACAATGACACTTAATGGACATTCTGAGGTAGTCACATCACTTATTTGTTGGGACAATTACTTGTTATCGAGTTCTTCTGATTGCACGGTCAATGTTTGGGTGTGCACTGAGGAGGGAATTCTGAAGGTGGCATACACTCACACTGAAAAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCGAAACCAATATTATTCTGCTCGTGCAAAGATAATTCAGTTCGTATATATGAATTGCCGACGTTTTTAGAGAGAGGTCGACTGTTTACAAGACAAGAAGTTCAATCCTTTGAGATAGGCCCTAACGGACTCTTCTTTACTGGAGATGGGACTGGTTTGTTGAATGTGTGA 1461 0.4415 MKDLIHGSTVCLMLFGMCFLFFHSIMAVITTTRRSERFRRTTPPTCTYWLAGRCNRNPCRFSHSSPTLPSNAYYNGNTTYKHSKQPTNCASKALEKPANRAPMAVVSVEKPTKCEPMAMSDEKITVCGLEAVSVEKPTKCEQKAVLIEKTADVEDVDTVVAKAPVEKSRSICKYWMTDTCVHGDLCQNLHSWFYGDGFSTLAKLHEHKKAVTGIALPAGSDKLYSGSTDGTVRAWDCNTGRCLGVINLNSEVTSLVSEGSWIFAGVKNAVKAWNIQTGADFTLDGPMGQVLSLNVGNDILLAGAEDGVIYAWRVSSDPKAESPFELVATLSGHTKPVVCLAIGCYKMLYSGSMDHSIKVWDLDTLQCTMTLNGHSEVVTSLICWDNYLLSSSSDCTVNVWVCTEEGILKVAYTHTEKNAVLGLYGMTDAEAKPILFCSCKDNSVRIYELPTFLERGRLFTRQEVQSFEIGPNGLFFTGDGTGLLNV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2032 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 400 IPR001680 GO:0005515
Ahy12g2032 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Ahy12g2032 486 ProSitePatterns Trp-Asp (WD) repeats signature. 348 362 IPR019775 -
Ahy12g2032 486 Gene3D - 292 486 IPR015943 GO:0005515
Ahy12g2032 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 370 IPR001680 GO:0005515
Ahy12g2032 486 ProSiteProfiles Zinc finger C3H1-type profile. 166 193 IPR000571 GO:0046872
Ahy12g2032 486 SMART WD40_4 197 236 IPR001680 GO:0005515
Ahy12g2032 486 SMART WD40_4 364 401 IPR001680 GO:0005515
Ahy12g2032 486 SMART WD40_4 404 448 IPR001680 GO:0005515
Ahy12g2032 486 SMART WD40_4 276 313 IPR001680 GO:0005515
Ahy12g2032 486 SMART WD40_4 323 361 IPR001680 GO:0005515
Ahy12g2032 486 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 38 486 - -
Ahy12g2032 486 Pfam WD domain, G-beta repeat 200 236 IPR001680 GO:0005515
Ahy12g2032 486 Pfam WD domain, G-beta repeat 366 400 IPR001680 GO:0005515
Ahy12g2032 486 Pfam WD domain, G-beta repeat 325 361 IPR001680 GO:0005515
Ahy12g2032 486 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Ahy12g2032 486 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Ahy12g2032 486 PRINTS G protein beta WD-40 repeat signature 348 362 IPR020472 -
Ahy12g2032 486 PANTHER - 38 486 IPR044715 -
Ahy12g2032 486 SUPERFAMILY WD40 repeat-like 181 483 IPR036322 GO:0005515
Ahy12g2032 486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 364 - -
Ahy12g2032 486 SMART c3hfinal6 40 65 IPR000571 GO:0046872
Ahy12g2032 486 SMART c3hfinal6 167 192 IPR000571 GO:0046872
Ahy12g2032 486 ProSiteProfiles Zinc finger C3H1-type profile. 40 66 IPR000571 GO:0046872
Ahy12g2032 486 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 245 IPR001680 GO:0005515
Ahy12g2032 486 Gene3D - 187 291 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2032 Ahy-Chr12 104091145 104094278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2032 207 420 Eukaryotic Initiation Factors Gene Family AT2G46290 23.707 1.75e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy12g2032 WD40 1.60E-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2032 - - ahf:112726849 768.459