Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g2024 ATGGGAAAGTCTTTCAAGGATTCACTCAAAGCACTTGAAGCTGACATACACTTTGCAAATACTCTAGCTTCTGATTATCCGAGAGAATATGATGGCGCCACCTTACAAATGAGATTGTCTTTTAGCCCAGCTGCCCAGTTTTTCCTTTTCTTAGTCCAGTGGACCGATTGTCAGCTCGCCGGGGCTTTAGGATTGCTAAGAATTCTCATATACAAGACATATGAAGATGGGAAGACAACCATGTCCATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTCTATGGGGTGATATTTCCTTCTTTATTACAACTTCAGAGAGGAATCACTGATGTAGAAGACAGGAAACAAAAAGATATATGCGCTACGAAGTACAGACTGAGAGATTCAGCAGGAAAAGGAAAATTATCTGAGATTGATATAGAGAGAGAGGAAGAATGTGGTATTTGCTTGGAAGTAAACAGCATGGTTGTGTTGCCGAATTGCTACCATTCGATGTGTATGAAATGCTACCGAGACTGGCACGCGCGATCGCAGTCTTGCCCTTTCTGCCGGGATAGCCTTAAAAGAGTGAACTCCGGCGACCTGTGGATATATATGAGCAACAAGGAAATAGATGACTTGGCTTCAATCAACAAGGAGAACTTAAAGAGGCTGTTTATGTACATTGATAAGTTACCTCTAGTTGTGCCAGCTCCTATGTTCATGACTTATCCTCCACATCGTTTCTGA 729 0.4184 MGKSFKDSLKALEADIHFANTLASDYPREYDGATLQMRLSFSPAAQFFLFLVQWTDCQLAGALGLLRILIYKTYEDGKTTMSIYERKASLKEFYGVIFPSLLQLQRGITDVEDRKQKDICATKYRLRDSAGKGKLSEIDIEREEECGICLEVNSMVVLPNCYHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMSNKEIDDLASINKENLKRLFMYIDKLPLVVPAPMFMTYPPHRF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g2024 242 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Ahy12g2024 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Ahy12g2024 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE AIRP2 1 240 - -
Ahy12g2024 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Ahy12g2024 242 PANTHER RING FINGER PROTEIN 41, 151 1 240 - -
Ahy12g2024 242 SUPERFAMILY RING/U-box 135 189 - -
Ahy12g2024 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 193 IPR013083 -
Ahy12g2024 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g2024 Ahy-Chr12 103846345 103849601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g2024 90 188 C3H Transcription Factor Family AT5G01960 29.808 1.15e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g2024 K25840 - pop:7466068 414.846