Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1996 ATGACTCGCTGTAGTGCTCCGCCCTCATCATCGCCGCCGAGGCCAACACCTATTCCGGCCAAATTCTGGCGTGCATGTGCTGGAATCTCTGCACAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGACCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTAGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTTTTTCGCGGACCCTAAGACCGACGAGGTCTTCCTCAAGATTCTTCTCCTTCCTGTCACCGATGGATCCGCTCAGGATTTTCTTCCACCTGCCGTGGCCGCCGAAGGCAGCGGCAACGGCAATGGTGACGATGAAAAGGTTGAGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAACAATGGCGGAGGGTTTTCGGTGCCGAGATTCTGTGCGGACTTGATCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGACGCTTCGCATAACCGACCTCCACGGCGCCGTTTGGGAGTTTCGCCACATCTACCGCGGGACGCCGAGACGGCACCTCTTCACTTCTGGCTGGAGCAAGTTCGTTAACAGCAAGAAGATTATCTCTGGCGATACTGTGGTCTTCATGAAGGACTCCGATGGCAGGATGTTTGTCGGAATCCGCCGCAATATGTCGTCAGACGACGGTATCTCAGACGGCGGATTGGATTGGTTAGCAACGATAGTTGGGATGGACGAGGGGGAAAAGGAAAAAGAAGAGAAAAATGAAGAGGTGATAATGGAAGGGTTTGCAAGAAACGGGAAGGGGAGGGTGAGTTCGGCTTCAGTGGCGGAGGCGATGGAGCTGGCGGCCCAGAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGGGTTGGGGGGAGTTTGTGGTAAAGGCAGAGGATGTAGACGTGAAGATGAATGGTATTTTCTGCAGTGTTGGGATGAGAGTGAAGATGGCCAGAGAGAACTACGATTCTTCACGGATGACTTGGTTTCAGGGAACAGTTTCTGGTGTTACTGTTCCCGGTGAAGCTCAACCATGGAGCGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCTGAAATCTTGAAGAATGTAAGTCCCGTTAGTCCATGGCAGGTGGAGTTTCTTTCTGACACACCTTCACTTCCTCAAGTATTTCCCCCGACAAAAAAATTCAGAATTGCAGACGGTTCTTCTAAAATTTTCAGTCATGAAGTGGAAGAATCTTCCTTTTCCATGACAAGACTTGCTATTCCTGATTTAGCAATGGGAGTGCTGAATCAAACATTGTTGATGAGTAATTATGGCACCCCTTTTCCTGCTAGCATTCAGGGAGTCAGGCATCCTCTACTTTCTGCACCTACTTGTCCCATTTTTCCGATTAATCCTCCTCTGTCTATTGCTAACTCCTTTAAGAATAACATTAGACCAAGGTTAAATGCTATGTTGCCAGAGCCTAATATTAACACTCATAAACCTGAAAGCTTATCTCCACATAACAAGTCTAGTTTGACTCCTAACAGCAACTCAACCAAATCTGGGACTGCTTCTTTTCAACTATTTGGTTGTACTATTCAAACAGATCAAGAAATTGATGACCAATTGATGACCATAGCACCGCTAAAAATGACGCAGGAAAAGACAACGTATAATAGAGGCATTGACAAACCAATTACATAG 1725 0.4875 MTRCSAPPSSSPPRPTPIPAKFWRACAGISAQAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNFFADPKTDEVFLKILLLPVTDGSAQDFLPPAVAAEGSGNGNGDDEKVESYAKILTRSDANNGGGFSVPRFCADLIFPPLNFEEDPPVQTLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGIRRNMSSDDGISDGGLDWLATIVGMDEGEKEKEEKNEEVIMEGFARNGKGRVSSASVAEAMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNGIFCSVGMRVKMARENYDSSRMTWFQGTVSGVTVPGEAQPWSGSPWRMLQITWDESEILKNVSPVSPWQVEFLSDTPSLPQVFPPTKKFRIADGSSKIFSHEVEESSFSMTRLAIPDLAMGVLNQTLLMSNYGTPFPASIQGVRHPLLSAPTCPIFPINPPLSIANSFKNNIRPRLNAMLPEPNINTHKPESLSPHNKSSLTPNSNSTKSGTASFQLFGCTIQTDQEIDDQLMTIAPLKMTQEKTTYNRGIDKPIT* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1996 574 PANTHER AUXIN RESPONSE FACTOR 13 551 - -
Ahy12g1996 574 CDD B3_DNA 125 226 IPR003340 GO:0003677
Ahy12g1996 574 MobiDBLite consensus disorder prediction 497 526 - -
Ahy12g1996 574 Pfam Auxin response factor 283 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ahy12g1996 574 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 551 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ahy12g1996 574 SUPERFAMILY DNA-binding pseudobarrel domain 122 228 IPR015300 -
Ahy12g1996 574 Gene3D - 322 395 - -
Ahy12g1996 574 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Ahy12g1996 574 Gene3D - 123 228 IPR015300 -
Ahy12g1996 574 MobiDBLite consensus disorder prediction 505 526 - -
Ahy12g1996 574 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Ahy12g1996 574 SMART B3_2 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1996 Ahy-Chr12 103071221 103074151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1996 23 545 B3 DNA Binding Superfamily AT1G77850 43.911 2.80e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ahy12g1996 B3 7.50E-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1996 - - adu:107475253 963.755