Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1948 ATGTCTTCCCAAAACCAGGAACCCCAATTCATATATGATGCGTACATTAGTTCCGGTTTGCAGTTCCTTCATCCTTTTATTTCAGGTCTCTATGATGCACTCAAAAGTGTTGGACTGCATGTTTTAGCAGACCGCACCGAGCCCAAGACTAATATATCTGACGCAATCGAACGATGCAGAGTTTCTATCATAGTTTTCACAATAGCTTATGCTGAATCAACCTTATTCTTGCAAGAACTCGTGGACATAATGGAGTGTCATCGGAGGAAAGATCAGAAGGTTGTGCCCGTGTTCTATTGCTTAGATCCCTCCCAAGTATGCAATCGGAGCGGTTATTTTGGGCAGATTTTGTCGCTAACTCTGCAAGGTATCTCAAGGGATGAAAACAGGATGCTGAGTTATGAGACCGCCCTTCGACAAGCTGCTTCCATTTTACCCAGGTTTCTTCCAGATATCTGGAATAAGAGAGAAGTTATGAGCCATATAGTTGGACATGTTACATCCTTGATGGATTCAACGAAATTATTCATTGCAAAGCATCCGGTGGGAGTAGACTCTCGTGTGCAAGATTTGATTCAACTCTTAAACAATCAGAAAGCAGATGGTGTCCTCATAATAGCAATATGGGGAATGGCGGGAATAGGTAAAACTACAATTGCCAAAGCCCTCTACAACCAAATTAGCCACAATTTCGAGGTGAGAAAATTTGTCGCAGGCATCCAGGATAGGAAGGGGGATTATCCAATATGGGTGGCTTCCAAATTTATAGAAAAGAGGCTTCTTTTGTTTTTGAAAGACCAAGTTAAAACAAAAGCGCAAAACTTTGACTCAACAAGAAATATATGGTGGGAAGGAATTCGTTGCTTAAAGGTACTTCTTATACTTGATAATGTGAGAAGTGAAAGAGAACTGGAGGTTTTGCCAGTAACTCGTGAATGCTTTGGTCCAGGGAGTATAATAATCTTCACGACAAGGACTAAACATGATCGACTTCATGAGATTGGAGTTAATCATATATAG 1020 0.4088 MSSQNQEPQFIYDAYISSGLQFLHPFISGLYDALKSVGLHVLADRTEPKTNISDAIERCRVSIIVFTIAYAESTLFLQELVDIMECHRRKDQKVVPVFYCLDPSQVCNRSGYFGQILSLTLQGISRDENRMLSYETALRQAASILPRFLPDIWNKREVMSHIVGHVTSLMDSTKLFIAKHPVGVDSRVQDLIQLLNNQKADGVLIIAIWGMAGIGKTTIAKALYNQISHNFEVRKFVAGIQDRKGDYPIWVASKFIEKRLLLFLKDQVKTKAQNFDSTRNIWWEGIRCLKVLLILDNVRSERELEVLPVTRECFGPGSIIIFTTRTKHDRLHEIGVNHI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1948 339 Pfam TIR domain 12 165 IPR000157 GO:0007165
Ahy12g1948 339 PRINTS Disease resistance protein signature 285 299 - -
Ahy12g1948 339 PRINTS Disease resistance protein signature 205 220 - -
Ahy12g1948 339 Gene3D - 5 169 IPR035897 -
Ahy12g1948 339 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 120 IPR035897 -
Ahy12g1948 339 Pfam NB-ARC domain 186 327 IPR002182 GO:0043531
Ahy12g1948 339 ProSiteProfiles TIR domain profile. 10 132 IPR000157 GO:0007165
Ahy12g1948 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 328 IPR027417 -
Ahy12g1948 339 SMART till_3 11 144 IPR000157 GO:0007165
Ahy12g1948 339 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 328 IPR044974 GO:0006952
Ahy12g1948 339 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 21 328 - -
Ahy12g1948 339 Gene3D - 170 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1948 Ahy-Chr12 101418172 101420324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1948 5 327 WRKY Transcription Factor Family AT4G12020 29.290 3.20e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1948 - - aip:107627607 557.755