Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1884 ATGTCAAGTATTCAAATGGCTCATGTGGATTTGGAACAAGGAAGAATCCTCCACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGGCTCATGCTACTCCCACTTCTACTCCACAAATGGTGGTGGATCCTATGATGAAGATTGCTGCTCCTATGGTGGAGCCTCAAATGCTGCAGATGGTGATGGTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGGTTACCTGAGATTAAGGTGCATTTGGCCACCAACAATAAGGTTGAGAGTAGGGATTGCAGGATTTGCCACCTTGGTTTGGAAGGTGATGATGGGAATAATGAATCTGGTGTTCCAATTGAATTGGGTTGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCATACAATTGCACGGAATGTGTATTCAGCAAGTGAGGACACAACAGAGACATTGAGTGACACTAACAACAACAATAATATTAGTGTCACTGTTGGTTCAGCAGCATCCACAACAATCTCAGCACCTTCATCATCATCAGAAACTAGAAGATTTTGGCATGGCCATCGTTTCCTCAATTTTCTCCTTGCTTGTATGGTCTTTGCATTTGTCATATCATGGCTTTTTCACTTCAATGTTCCCTCTTCTTAA 735 0.4245 MSSIQMAHVDLEQGRILHHHHHHHSSVTGSDISLCFSDADDGGSCYSHFYSTNGGGSYDEDCCSYGGASNAADGDGDDDDCSVEIEIESGLPEIKVHLATNNKVESRDCRICHLGLEGDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSASEDTTETLSDTNNNNNISVTVGSAASTTISAPSSSSETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1884 244 PANTHER OS01G0850200 PROTEIN 5 243 - -
Ahy12g1884 244 CDD RING_CH-C4HC3_MARCH 109 163 - -
Ahy12g1884 244 PANTHER ZINC FINGER, RING-CH-TYPE 5 243 - -
Ahy12g1884 244 ProSiteProfiles Zinc finger RING-CH-type profile. 101 169 IPR011016 GO:0008270
Ahy12g1884 244 SUPERFAMILY RING/U-box 103 166 - -
Ahy12g1884 244 SMART ringv_2 108 163 IPR011016 GO:0008270
Ahy12g1884 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 174 IPR013083 -
Ahy12g1884 244 Pfam RING-variant domain 109 162 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1884 Ahy-Chr12 99978108 99983221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1884 81 244 C3H Transcription Factor Family AT5G05830 59.394 7.53e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1884 - - gmx:100813946 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1884 12 99978108 99983221 Ahy17g1007 17 12743690 12747116 ECH
Ahy12g1884 12 99978108 99983221 Ahy12g1884 12 99978108 99983221 ECH