Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1782 ATGGCTAGAATGGGAACCACTCTTCTCTACATTGCAACACTGGTCTCTGTTTTTGCTGCAGCCACTGCCAGAATCCCCGGAGTTTACACTGCAGGTTCCTGGCAGGGTGCTCACGCCACTTTCTACGGTGGAAATGATGCATCTGGAACAATGGGCGGTGCATGTGGGTACGGGAACCTATACAGCCAAGGGTACGGCGTGAACACGGCGGCGCTGAGCACAGCTCTGTTCAACAACGGGCTGAGCTGCGGGGCATGCTTCGAGATCAAGTGCGACCAGGACCCGCGGTGGTGCAACCCCGGCAGCCCCTCTATCGTGGTAACCGCCACCAACTTCTGCCCACCGAATTTTGCCCAACCCAGCGATAACGGCGGTTGGTGTAACCCCCCAAGGGAACACTTCGACCTCGCTATGCCAATGTTCCTCAAGATCGCTCAGTACCGCGCTGGAATTGTACCCGTCAGCTACCGCCGGGTGCCATGCAGGAAGATAGGTGGAATCAGATTCACAATCAACGGTTTCCGTTACTTCAACTTGGTCTTGATCACCAACGTCGCGGGTGCAGGGGATATCGTCCGCGTGAGCATAAAGGGATCCAAAACTGAATGGAACCCCATGAGCCGTAACTGGGGGCAAAATTGGCAATCCAATGCTGATTTAGTGGGCCAGGCCCTCTCCTTTAGGGTTAAAGGCAGTGACAGACGCGCCTCTACCTCATGGAACGTGGCACCATCTAATTGGCAGTTTGGCCAAACCTTCATGGGCAAGAATTTCCGCATCTAA 783 0.5492 MARMGTTLLYIATLVSVFAAATARIPGVYTAGSWQGAHATFYGGNDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPRWCNPGSPSIVVTATNFCPPNFAQPSDNGGWCNPPREHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKIGGIRFTINGFRYFNLVLITNVAGAGDIVRVSIKGSKTEWNPMSRNWGQNWQSNADLVGQALSFRVKGSDRRASTSWNVAPSNWQFGQTFMGKNFRI* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1782 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Ahy12g1782 260 SUPERFAMILY PHL pollen allergen 165 254 IPR036749 -
Ahy12g1782 260 PANTHER EXPANSIN 5 259 - -
Ahy12g1782 260 SMART dpbb_1 69 156 IPR007112 -
Ahy12g1782 260 Gene3D - 166 258 IPR036749 -
Ahy12g1782 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Ahy12g1782 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Ahy12g1782 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Ahy12g1782 260 Gene3D - 19 162 IPR036908 -
Ahy12g1782 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Ahy12g1782 260 PANTHER EXPANSIN-A15 5 259 IPR002963 GO:0009664
Ahy12g1782 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Ahy12g1782 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Ahy12g1782 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1782 Ahy-Chr12 96078704 96081830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1782 4 260 Expansin Gene Family AT2G39700 81.323 6.72e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1782 - - gmx:100803595 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1782 12 96078704 96081830 Ahy17g1078 17 14495784 14498051 ECH
Ahy12g1782 12 96078704 96081830 Ahy12g1782 12 96078704 96081830 ECH
Ahy12g1782 12 96078704 96081830 Ahy18g0390 18 3333336 3335566 ECH
Ahy12g1782 12 96078704 96081830 Ahy13g0462 13 4766751 4769163 ECH