Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1727 ATGTCCGGGCGGCGGCAGAGAAGTTCCGGTCGCTCAGAGTTCACAGAGAATGAGATCAATGATCTTGCTTCAAGGTTACAAGCATTGCTCCCACAACCTAACCAACAAACAAGGAACTCAAGGGTATCAGTGTTGGAGATCTTGAAGGAAACTTGCAGTCACATCAAGCGGCTACAGAAAGATGTGGAAGACCTTAGTGAAACGCTGACAGGGCTGTTGGATTCTCTTCACATTACTGATATTGACATCACTCTTTTACAAGATCTTTTGCAACAAAAATAA 282 0.4397 MSGRRQRSSGRSEFTENEINDLASRLQALLPQPNQQTRNSRVSVLEILKETCSHIKRLQKDVEDLSETLTGLLDSLHITDIDITLLQDLLQQK* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1727 93 Gene3D - 4 87 IPR036638 GO:0046983
Ahy12g1727 93 PANTHER DNA BINDING PROTEIN 1 92 IPR044172 -
Ahy12g1727 93 Pfam Helix-loop-helix DNA-binding domain 18 59 IPR011598 GO:0046983
Ahy12g1727 93 Coils Coil 48 75 - -
Ahy12g1727 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 58 IPR011598 GO:0046983
Ahy12g1727 93 PANTHER DNA BINDING PROTEIN 1 92 - -
Ahy12g1727 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 75 IPR036638 GO:0046983
Ahy12g1727 93 Coils Coil 83 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1727 Ahy-Chr12 93755614 93756667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1727 1 75 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.753 7.93e-16 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy12g1727 HLH 3.20E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1727 - - adu:110277334 121.324