Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1652 ATGGATGGTCGCCGGAGGATAACACTTTATGATCAAATGACAGCTGGCAAAACCACCTCCCTAGCAGATTTGATCCTTCACGACAGTGTCACCGCCGTCTCTGCCGTCGCCGCAGACACCACCGCCGCCGCTGCCGATTCTGAAAGCTGCGAGTTGAGCCAAAGCCGAACCCTCGTAGATATCCTCCGCGAAGATGAACACAACAACATCACCACAGCGGACCGCAAATCTAGAAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTCGCTCTCAATTCAAGATCAAATTACAGTAATGAAAACAATTCCACTAACATCGACGACAACAACAACAACAACAGCAGCAGCAACAATCATATTGATACCAACCTATCCGAGTTGCAAGCGCGCATCGATCCGGACGAGTTGACTCAGCAAGACGCGACGACTCACCGACAGCAAAACGACGCCATTGCTACTGCCGCCGCCGCAGACACTGAAATCCCGGCGGAAGTCGCGGTGGTGGGACCGGTTGGCGTGTCGCTAATGGATTTGTTGGAGGAAACGGACATGGAAACGGGATTCGAAGTTCCGAGTTACAGAATGAGCAATGCTGATTTTGAGGATGTGATTGAATGTGTAGAAGAAAAGTGCGAAGAAGAAGGGGCGAGTATCGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGTGCGGCTTTTATACCCTGTGGGCACACGTTCTGCAGGTTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGGAACTGCCCTCTCTGCAATAATTTCATCTTGGAAATTCTTGATATTTTCTGA 822 0.5024 MDGRRRITLYDQMTAGKTTSLADLILHDSVTAVSAVAADTTAAAADSESCELSQSRTLVDILREDEHNNITTADRKSRKSFSFMDKLRFKLALNSRSNYSNENNSTNIDDNNNNNSSSNNHIDTNLSELQARIDPDELTQQDATTHRQQNDAIATAAAADTEIPAEVAVVGPVGVSLMDLLEETDMETGFEVPSYRMSNADFEDVIECVEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1652 273 SUPERFAMILY RING/U-box 224 269 - -
Ahy12g1652 273 PANTHER OS01G0917900 PROTEIN 3 149 - -
Ahy12g1652 273 PANTHER OS01G0917900 PROTEIN 95 273 - -
Ahy12g1652 273 Pfam Zinc finger, C3HC4 type (RING finger) 222 266 - -
Ahy12g1652 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 272 IPR013083 -
Ahy12g1652 273 ProSiteProfiles Zinc finger RING-type profile. 225 263 IPR001841 -
Ahy12g1652 273 PANTHER OS01G0917900 PROTEIN 3 149 - -
Ahy12g1652 273 PANTHER OS01G0917900 PROTEIN 95 273 - -
Ahy12g1652 273 SMART ring_2 225 262 IPR001841 -
Ahy12g1652 273 CDD RING-HC 225 262 - -
Ahy12g1652 273 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1652 Ahy-Chr12 89651926 89653524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1652 1 273 C3H Transcription Factor Family AT3G25030 35.616 6.88e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1652 - - gmx:100802736 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1652 12 89651926 89653524 Ahy2g1419 2 75224100 75224918 hybridization