Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1618 ATGGATTCAAATTCGCTTCAAGGCTATCAACTTGAACAACAACAAAGCAGTAGTTCTGGTTTGCTTCGTTATCGCTCTGCACCGAGTTCGCTTCTCGCGAATCTCACTCCAACTTTCACTGAATCCCAAGCCTTGCTCTCGAGATTAGCCAATAGTAATAGCAGTAGCAGCAAAAACAATATTTCCAAAAACGATACCGTTTCACATAGCTTCCAAGAATTCCCAGATACAAACACAAACACAAACACAAAAACAAACAATAAGGGTTGTGATTCGAAGGGTCTGAGGCGGATGAATTCTGGAGGGCGCGGATATGGTGGTGGTGGTGGATTGCCACCTCACTACCCAAGGAACACTTCTTCTTCTTCTTCTTCTTCTTGTTCATCTTCAATGGATGGGTCTTTAGGGTTGGTTATGGGTTCAATGGGAATGGACCAAAAAGGGTTTGGCGTTTCTTCTTCTTTAAATCTTCTCAGGCAGAATAGTTCCCCTGCTGACCTTTTCTCCAACGTTTCATTTCAAAATGGATTTGCTACCATGAAAGGTGTCGGGAACTATGGTCATGTTAACAGCACCAGCGAAGAACTTAGTCCATCGATGAACAGATTGAAGAATCAGATTAGCTTCTCATCAAGAACTGCTTCTTCCTTGGGAATGTTGTCGCAGATCTCCGAAATAGGGAACGAGGAAATTGGGGCAAATAGCCCTGAAGATGGGAGGCAGGGTGGTAGCAATGGTGATGCCTTGCATTACAGCCCCGGATTCTGCTATGGTTCTTGGAGTGATGCACCACAACACTCTGAAAACCTCACTGGCTTGAAAAGAGGGCGAAGTAGCAATGGAAAGTTGTTTCCTGATGTTCAGAATGGAGAGCTAGGAAATCAAGTTCATATGCTATCACATCACTTGAGTTTGCCGAAAACTTCATCAGAGATGATTGGTATGGAGAATCTGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAGCGAGGCTGCGCTACTCATCCCCGAAGCATAGCTGAAAGGGTACGAAGAACACGGATCAGCGAACGAATGAGGAAATTGCAAGAGCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCGGTTGACTACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAAGAGGGCAAACTGCAAATGTATAAGCATGCGGAGAGCAGATACAAATCAAATTGTTTAA 1242 0.4388 MDSNSLQGYQLEQQQSSSSGLLRYRSAPSSLLANLTPTFTESQALLSRLANSNSSSSKNNISKNDTVSHSFQEFPDTNTNTNTKTNNKGCDSKGLRRMNSGGRGYGGGGGLPPHYPRNTSSSSSSSCSSSMDGSLGLVMGSMGMDQKGFGVSSSLNLLRQNSSPADLFSNVSFQNGFATMKGVGNYGHVNSTSEELSPSMNRLKNQISFSSRTASSLGMLSQISEIGNEEIGANSPEDGRQGGSNGDALHYSPGFCYGSWSDAPQHSENLTGLKRGRSSNGKLFPDVQNGELGNQVHMLSHHLSLPKTSSEMIGMENLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQFKNLSEKRANCKCISMRRADTNQIV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1618 413 Pfam Helix-loop-helix DNA-binding domain 340 386 IPR011598 GO:0046983
Ahy12g1618 413 MobiDBLite consensus disorder prediction 268 288 - -
Ahy12g1618 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 385 IPR011598 GO:0046983
Ahy12g1618 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 405 - -
Ahy12g1618 413 Gene3D - 336 406 IPR036638 GO:0046983
Ahy12g1618 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 399 IPR036638 GO:0046983
Ahy12g1618 413 PANTHER TRANSCRIPTION FACTOR BHLH130 13 405 - -
Ahy12g1618 413 SMART finulus 341 391 IPR011598 GO:0046983
Ahy12g1618 413 MobiDBLite consensus disorder prediction 1 21 - -
Ahy12g1618 413 MobiDBLite consensus disorder prediction 51 130 - -
Ahy12g1618 413 MobiDBLite consensus disorder prediction 51 93 - -
Ahy12g1618 413 MobiDBLite consensus disorder prediction 115 130 - -
Ahy12g1618 413 Coils Coil 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1618 Ahy-Chr12 87721576 87724841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1618 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 45.792 1.43e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy12g1618 HLH 4.40E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1618 - - aip:107625483 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1618 12 87721576 87724841 Ahy12g1618 12 87721576 87724841 ECH
Ahy12g1618 12 87721576 87724841 Ahy18g0329 18 2775199 2778433 ECH
Ahy12g1618 12 87721576 87724841 Ahy13g0570 13 5952498 5956602 ECH
Ahy12g1618 12 87721576 87724841 Ahy2g1386 2 73674522 73677668 hybridization
Ahy16g0369 16 7224047 7228598 Ahy12g1618 12 87721576 87724841 PCT
Ahy6g0959 6 12661315 12665701 Ahy12g1618 12 87721576 87724841 PCT
Ahy12g1618 12 87721576 87724841 Ahy16g0369 16 7224047 7228598 PCT
Ahy12g1618 12 87721576 87724841 Ahy6g0959 6 12661315 12665701 PCT