Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1606 ATGGAGTCTCATGACGAGACAGGATGCCAGGCTGCTGAACGTCCCATACTTTGCATTAATAATTGTGGCTTCTTTGGAAGGGCTGCCACCATGAACATGTGTTCCAAATGCTACAAGGACATGCTGTTGAAGCAGGAACAGGACAAGCTCGCAGCAGCATCGGTTGAAAACATCGTGAATGGTGCTTCCAGCAGCACTGGCAAACATGCTGTGAGTGCAGGTGGGTTGGACATACAAGTTGAAAATGTGGAAGCCAAGATAGTCTCTGCTGAGATTTCTGTGGATTCAACCTCTGTTGAGAATTTGGAGACGAAAGCCAAGGCAGGCCCCAGCAGATGCGCGACTTGCCAAAAGCGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGAAACCTCTTTTGTTCAATGCATCGCTATTCTGACAAACATGACTGCCCCTTTGATTATCAGAGTGTTGGCCGGGATGCTATCGCTAAAGCGAACCCTGTGGTCAAGGGTGATAAGCTTGATAAAATCTAG 519 0.4759 MESHDETGCQAAERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAAASVENIVNGASSSTGKHAVSAGGLDIQVENVEAKIVSAEISVDSTSVENLETKAKAGPSRCATCQKRVGLTGFSCKCGNLFCSMHRYSDKHDCPFDYQSVGRDAIAKANPVVKGDKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1606 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Ahy12g1606 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Ahy12g1606 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Ahy12g1606 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Ahy12g1606 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Ahy12g1606 172 Gene3D - 1 68 - -
Ahy12g1606 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Ahy12g1606 172 SUPERFAMILY AN1-like Zinc finger 99 167 IPR035896 -
Ahy12g1606 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Ahy12g1606 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Ahy12g1606 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Ahy12g1606 172 Gene3D - 88 168 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1606 Ahy-Chr12 86845019 86847153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1606 5 172 C2H2 Transcription Factor Family AT3G52800 42.604 1.02e-40 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1606 12 86845019 86847153 Ahy12g1606 12 86845019 86847153 ECH
Ahy12g1606 12 86845019 86847153 Ahy18g0337 18 2875155 2877901 ECH
Ahy12g1606 12 86845019 86847153 Ahy2g1363 2 72267991 72270093 hybridization