Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1595 ATGGCAGACCCTTACTCTAATTTCTTCAGAGGCTTCTTCCACCATAACAATAACCATAACCATTTCAATTATAATCCCACTCATCCTCCTCCTCTTTCTTCCTCTCATCACCACCACCACCACCACCACCATCCTTATCTTCACAACTTCATCAAAACCACCAATTACAACAACAATAATAATAGCACCTTTCTCCACCATCAAATTACAACTGCCACTACTTCTTCTTCTTCTTCTTCTTATTCTTATTATTCTTCACCCCCTTCCCCTCCTCTCAGAGAAGCTCTCCCACTTCTCAGTCTTAGTCCAGCAAACCAGGAACGCGAGGAACATCACTATCATCATCACCATGATGATTATACTCATCAACCAGAAAAAGATCAAGAAACACAAGATCATAGTCTTTCCACCACCACCTGCACTGCCATGGATACTAGTTTTGTCCTCATCCACGACAAAATGGACGAGGACATCAGAATCCATGGCGGTCGCAACAAGCCCAAAGGCGAGGCGAAAGGGGAGGACGGCAACAACGACGAAGACAAAGACGACCAAGAAGAAGACAACAACAATAGTGTGACGGTTGCACTTCACATAGGGTTACCAAACCCTAGTGCTGCTGAGCTGGCAACAATTACCTCCATAGAATCTTCTTCTAACAATAATAACAATAGCAATTCATCATCAACGGAGAAAGAACAACATCATCATGAAGAAGAAGGAGAAGGGAGTGAAGAGTCGCAGTGTCATAAAGGGTTCTTGGGTACAAGACTCAACAAGGGACAGTACTGGATCCCAACCCCAACCCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTGTTTGCTACAAAACTTTCAACAGATACAACAATATGCAAATGCATATGTGGGGGCATGGATCACAATACAGAAAAGGTCCTGAATCTCTAAGAGGAACTCAACCAACAGGTATGCTTAGGCTTCCATGTTATTGCTGTGCACCAGGTTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGATTTTAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCCGGAAATGCGGCAAGGCCTTCGCCGTCCGAGGCGATTGGCGGACGCATGAGAAAAATTGTGGCAAACTTTGGTATTGCATCTGTGGATCCGATTTTAAACACAAGAGGTCGCTTAAGGATCATATAAAGGCTTTTGGGAGCGGACACGCCGCGTTTGGGATCCACGGCGGATTATTTGAAGAGGAGGAGGAGCCGGCATCTGAAGTCGAACAAGATAATGACGAACTCAACCAGTAA 1329 0.4477 MADPYSNFFRGFFHHNNNHNHFNYNPTHPPPLSSSHHHHHHHHHPYLHNFIKTTNYNNNNNSTFLHHQITTATTSSSSSSYSYYSSPPSPPLREALPLLSLSPANQEREEHHYHHHHDDYTHQPEKDQETQDHSLSTTTCTAMDTSFVLIHDKMDEDIRIHGGRNKPKGEAKGEDGNNDEDKDDQEEDNNNSVTVALHIGLPNPSAAELATITSIESSSNNNNNSNSSSTEKEQHHHEEEGEGSEESQCHKGFLGTRLNKGQYWIPTPTQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAFGIHGGLFEEEEEPASEVEQDNDELNQ* 443
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1595 442 Coils Coil 430 442 - -
Ahy12g1595 442 SUPERFAMILY beta-beta-alpha zinc fingers 247 300 IPR036236 -
Ahy12g1595 442 PANTHER ZINC FINGER PROTEIN WIP2 59 439 IPR043584 GO:0003700|GO:0010468
Ahy12g1595 442 MobiDBLite consensus disorder prediction 158 178 - -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 106 136 - -
Ahy12g1595 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 362 382 IPR013087 -
Ahy12g1595 442 SMART c2h2final6 362 382 IPR013087 -
Ahy12g1595 442 SMART c2h2final6 278 300 IPR013087 -
Ahy12g1595 442 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 59 439 - -
Ahy12g1595 442 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Ahy12g1595 442 SUPERFAMILY beta-beta-alpha zinc fingers 343 382 IPR036236 -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 106 132 - -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 158 189 - -
Ahy12g1595 442 Gene3D Classic Zinc Finger 277 300 - -
Ahy12g1595 442 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 230 247 - -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 24 44 - -
Ahy12g1595 442 Gene3D Classic Zinc Finger 339 415 - -
Ahy12g1595 442 MobiDBLite consensus disorder prediction 216 249 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ahy12g1595 Ahy-Chr12 86366564 86371102 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1595 193 438 C2H2 Transcription Factor Family AT3G57670 75.097 2.82e-137 397
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g1595 None None None
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1595 12 86366564 86371102 Ahy12g1595 12 86366564 86371102 ECH
Ahy12g1595 12 86366564 86371102 Ahy18g0340 18 2921200 2923113 ECH
Ahy12g1595 12 86366564 86371102 Ahy13g0561 13 5832192 5834515 ECH
Ahy12g1595 12 86366564 86371102 Ahy2g1355 2 71408754 71413314 hybridization
Ahy16g0384 16 7460608 7462602 Ahy12g1595 12 86366564 86371102 PCT
Ahy6g0940 6 12269683 12271634 Ahy12g1595 12 86366564 86371102 PCT
Ahy12g1595 12 86366564 86371102 Ahy16g0384 16 7460608 7462602 PCT
Ahy12g1595 12 86366564 86371102 Ahy6g0940 6 12269683 12271634 PCT