Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1579 ATGGAGAAGATTTCACTAACAACAACTGCTCATAACTGTTTTTTCACTTCTACACTTCCAAAGACATCTTCTTTCTCTTCTTCTCTATTCGCCTCTAACCAGCTTCTTGGTCTTCCCTTATCTTCTTCTTCTTCTTCTGCGTCCACCAATCCTCGCCTCAGACTTGTTTCTAGAAACGCCGCTTCTTGCAGGACCGTCAAATGCTCTGTTTCTGAAGCCGCTGAACCCCTAACTGAGAAGAGGCAATTGAAGAGAAGAGGGGATGTAAGGAACATAGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTAGTTGATGCCATGTTGAAACAGACAAAGGTGTTTCGTGATAATCAATTTGTGCAGGAAAGGATAATGGACTCAAATGATTTGGAGCGTGAGAGAGGAATCACAATATTGAGTAAAAATACATCCGTCTCCTATCATGACACAAAGATTAATATAATAGATACTCCCGGTCACTCTGATTTTGGAGGTGAAGTAGAGCGTATCCTGAACATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGACCAATGCCACAGACAAGATTTGTCTTAAAGAAAGCATTAGAGTTTGGTCATTCAGTTGTCGTGGTTGTTAATAAGATAGACAGGCCATCTGCTCGCCCAGATTTTGTTGTCAATTCAACTTTTGAACTCTTCATTGAATTAAATGCAACAGATGAGCAGTGCGACTTTCAAGTAATATATGCAAGTGGTATAAAAGGACAAGCAGGGTTGTCTCCTGAGAATCTGGCAGAAGACCTTGGGCCATTGTTTGAGTCCATCATCAGATGCATCCCAGGACCAAGGATTGATAAAGATGGCGCTCTTCAAATGCTTGTCACAAATATTGAGTATGATGAACACAAAGGGCGTATAGCAATTGGGCGCTTGCAAGCTGGAGTTTTGGAAAAAGGCATGGATGTCAAGGTATGCACATCAGAAGATTCATGTAGATATGGAAGAGTTAGTGAGCTTTACGTGTATGATAAATTCAGTAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCAGTATGCGGAATTGGTGATATTCAGATTGGAGAGACAATTGCTTGTAAAGTATCTGGAAAGCCACTACCTTCCATAAAGGTGGAGGAACCAACTGTGAAAATGGCTTTCTCCATAAACACTTCCCCTTTTGTTGGCCGCGAGGGAAAGTATGTTACCAGTAGGAACTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTCGCCATGAAAGTTGAAGATGGTGAAACAGCAGATACATTCATTGTCAGTGGGCGTGGAACTTTGCATATCACCATACTGATTGAAAATATGCGAAGAGAAGGATATGAATTCATGGTTGGCCCTCCTAAAGTTATCAACAAGAAAGTTAACGACAAATTGCTTGAACCATATGAGATTGCAACTGTTGAGGTACCTGAAGAACATATGGGAGCTGTTGTTGAACTCCTTGGGAAGAGACGAGGGCAGATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACATTACTCAAATACAAGATCCCAACTCGTGGCCTCCTTGGATTACGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAATACTATCTTTGATAGCTATGGACCCTGGGCTGGTGACATGAGTACCCGGGATCAAGGCTCACTGGTTGCTTTTGAGGATGGAACAAGTTCTTCTTATGCAATCGCTAGTTCACAGGAAAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTATAAAGGTCAAATTGTTGGCATCCATCAGCGACCTGGGGACTTGTCATTGAATGTTTGCAAGAAAAAGGCTGCAACAAACATACGTTCCAACAAGGAACAAACAGTGATTCTTGATACCCCCTTGGATTATAGTCTTGATGACTGCATCGAGTACATACAAGAAGATGAACTAGTAGAGGTTACTCCCCAAAGTATTCGAATGTGCAAGAATCCAAAGCTTCAGAAGAAAACAAGGTAG 2046 0.4218 MEKISLTTTAHNCFFTSTLPKTSSFSSSLFASNQLLGLPLSSSSSSASTNPRLRLVSRNAASCRTVKCSVSEAAEPLTEKRQLKRRGDVRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVSYHDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHSVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFESIIRCIPGPRIDKDGALQMLVTNIEYDEHKGRIAIGRLQAGVLEKGMDVKVCTSEDSCRYGRVSELYVYDKFSRVPAESVEAGDICAVCGIGDIQIGETIACKVSGKPLPSIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTIFDSYGPWAGDMSTRDQGSLVAFEDGTSSSYAIASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLQKKTR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1579 681 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 128 143 IPR031157 -
Ahy12g1579 681 TIGRFAM small_GTP: small GTP-binding protein domain 90 238 IPR005225 GO:0005525
Ahy12g1579 681 Gene3D Elongation Factor G (Translational Gtpase), domain 3 390 673 - -
Ahy12g1579 681 Gene3D - 87 282 IPR027417 -
Ahy12g1579 681 CDD TypA_BipA 88 281 - -
Ahy12g1579 681 Gene3D - 473 566 - -
Ahy12g1579 681 Gene3D bipa protein 567 674 IPR042116 -
Ahy12g1579 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 289 IPR027417 -
Ahy12g1579 681 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 89 678 IPR006298 GO:0005525
Ahy12g1579 681 Pfam Elongation factor G C-terminus 480 564 IPR000640 -
Ahy12g1579 681 Gene3D Translation factors 283 383 - -
Ahy12g1579 681 Pfam Elongation factor Tu GTP binding domain 89 279 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 CDD BipA_III 389 467 - -
Ahy12g1579 681 Pfam Elongation factor Tu domain 2 303 372 IPR004161 GO:0005525
Ahy12g1579 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 87 282 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 PRINTS GTP-binding elongation factor signature 135 143 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 PRINTS GTP-binding elongation factor signature 207 216 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 PRINTS GTP-binding elongation factor signature 91 104 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 PRINTS GTP-binding elongation factor signature 155 165 IPR000795 GO:0003924|GO:0005525
Ahy12g1579 681 PANTHER BNAC09G43450D PROTEIN 69 681 - -
Ahy12g1579 681 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 69 681 - -
Ahy12g1579 681 SMART EFG_C_a 479 568 IPR000640 -
Ahy12g1579 681 SUPERFAMILY Translation proteins 235 375 IPR009000 -
Ahy12g1579 681 CDD BipA_TypA_C 482 561 IPR035651 -
Ahy12g1579 681 SUPERFAMILY EF-G C-terminal domain-like 482 597 IPR035647 -
Ahy12g1579 681 CDD BipA_TypA_II 289 382 - -
Ahy12g1579 681 SUPERFAMILY EF-G C-terminal domain-like 387 471 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1579 Ahy-Chr12 84910001 84918264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1579 89 216 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 2.98e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1579 K06207 - gmx:100785222 1164.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1579 12 84910001 84918264 Ahy12g1579 12 84910001 84918264 ECH
Ahy12g1579 12 84910001 84918264 Ahy2g1339 2 69401119 69409445 hybridization