Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1543 ATGCCAGAACCCGAACCAGCAACAGCAAACAACACAAGACATACGTTTTGTTTATCGATCTTCGTGACGACGATGAACTCAGCGGCGTCACAGGATCACTGGAGGAGTTACTTCAGGAAGGCGAATTCCGACATATTCAGCATCATTGACAACGCCATCACGGTGGCCGCTTCCGATTGCCCCAAGGAATTCAGGCTTCGCCGTGACGCCATTGCCGAGCTCCTCTTCTCCTGTAGGCTCGCGCGGTGCCGTGGATGTGACCGTGTTGAGCTCGCCGTCGATGGAGGCAGCGGCAAAGATGATTGTGGTGGTGGCGGCGGCGGCGGCCGCAAGAGCGGTGAGTCCGAGGTCGAGACGGGTGGGAGTAAAGAGAGCAAAGTCAACAGCAGCAGAGATGATAGGGGAGAGGTGAATGTTCAGATCGTGAGCAATTACAGCTATGGGGAAGCAGAAGCCTTGACGGATGAGATTGAAGAACAGTCTCTGTATGCTGATGAGGTCTTCAGGATCAGACAGGTGTTGCTTAATTCTCAAGAAGAGTCTGATTCAGTAATATTCGAGTCATTGCGGAGGCTTCAGCTGATGGAGCTCACTGTGGATCTTCTGAAGGCCACTGAGATTGGTAAGGCTGTCACTCCTCTTCGAAAGCACAGCTCGAGGGATATTCGCCAACTTGCACGGACACTTATTGATGGCTGGAAAGTTATGGTGGATGAGTGGGTCAAGGCTACCACACCTATCACAGGTTCAGAAGGTACCCCAGATTCAGTAAAGCCATCTACAATTGATGAGGAAGAAGGGCTTCCATCACCTCCCATGGATGAAGGGGCTTTCTTTGCCACTCAAGCTGGTTCAATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATTATGGAAATCCTCAACAGAGTGGGGAATTCATCAAGAACCGTGAAAGTGGCAGAAGGGCATCGCTGGATAATCAACATATTGTAGAGATGAAAATTCAAGCTTCAGCCAATGACACAAACAAGGACTTTAAGGGTCAGCAAGCCATGAAACATGAGACTACTGTGAAGCTAACTAAGCTGGTAAACACTGATTCTGGCCCTGGCAGACCGCCAAAAACTACCATGCAGATAAAAGGGACTGTGAAACAGAAGATGCCTCAAAAGATAGAGACAAGTGTCATCCCAAAGCAGCCTCAGGCTAGTAATCAGGATAAATCCAAGCCTTCGGATGATTCTTCATTGAAAGTGAAGCTAGAAGCCGCTAAGAGAAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGCGAACGGTACAGGTTATGGAGTTGCACGACCTGCCCAAGCAAGCGGTTGCACACCGGAATCCACATGTGAAGCCTGGAATGCATAAGAGGAAATTGAATAACGGACGAAGATAG 1419 0.4926 MPEPEPATANNTRHTFCLSIFVTTMNSAASQDHWRSYFRKANSDIFSIIDNAITVAASDCPKEFRLRRDAIAELLFSCRLARCRGCDRVELAVDGGSGKDDCGGGGGGGRKSGESEVETGGSKESKVNSSRDDRGEVNVQIVSNYSYGEAEALTDEIEEQSLYADEVFRIRQVLLNSQEESDSVIFESLRRLQLMELTVDLLKATEIGKAVTPLRKHSSRDIRQLARTLIDGWKVMVDEWVKATTPITGSEGTPDSVKPSTIDEEEGLPSPPMDEGAFFATQAGSMELSQFFDGMDDYGNPQQSGEFIKNRESGRRASLDNQHIVEMKIQASANDTNKDFKGQQAMKHETTVKLTKLVNTDSGPGRPPKTTMQIKGTVKQKMPQKIETSVIPKQPQASNQDKSKPSDDSSLKVKLEAAKRKLQERYQQAENAKRQRTVQVMELHDLPKQAVAHRNPHVKPGMHKRKLNNGRR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1543 472 MobiDBLite consensus disorder prediction 97 133 - -
Ahy12g1543 472 ProSiteProfiles TFIIS N-terminal domain profile. 165 240 IPR017923 -
Ahy12g1543 472 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 27 471 - -
Ahy12g1543 472 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 159 251 IPR035441 -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 373 404 - -
Ahy12g1543 472 Pfam TFIIS helical bundle-like domain 189 237 IPR017923 -
Ahy12g1543 472 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 156 248 IPR035441 -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 347 413 - -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 246 269 - -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 116 133 - -
Ahy12g1543 472 CDD TFIIS_I 164 238 - -
Ahy12g1543 472 Coils Coil 412 439 - -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 448 472 - -
Ahy12g1543 472 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 27 471 IPR044805 -
Ahy12g1543 472 MobiDBLite consensus disorder prediction 457 472 - -
Ahy12g1543 472 SMART TFS2_5 164 239 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1543 Ahy-Chr12 82647901 82652082 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Ahy12g1543 Med26 2.00E-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1543 - - aip:107625382 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1543 12 82647901 82652082 Ahy12g1543 12 82647901 82652082 ECH