Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1524 ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAATTCGACTGGGATGGCGAGATGCGGTTTGCCCTAGCTGTAATGAGGGATTTATTCAGGAACTTAATGATATGGTGCATGTTAACCCTCTGGAATTCTTTGGACTAGATAACAATGAAGAGCATGACCAAAGATTTGGACTTATGGAAACTTTCTCTTCCTTTATGCGGCAGCAAATGGCAGACAGAAGTCATAGCCATGATATCAGGGCACAATCGGAATCTATTTCGGAACAAGGGGCAGGTTTTGCTCCTTTGTTGATATTTGGTGGTCAAATTCCTTTTAGATTATCTGGACATGGTGGTTTTGAGGCTCTCTTTAATGGGACTCCAGGTATTGGTCTTACACGAGGCAACACAGGTGATTATTTTATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTCTCAGCTAATACTCGCCAAGGGCCTCCGCCTGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAAGTTACACAGAGGCATCTTCGTTCGGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTAGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCAGATTGTATTGTTCCATGGTTGGTCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAAGGATTGAGTGGTAACCAAGGCTTGAATGGCCGAAGTAGAGGTAACTTTAGTGGCAGCAGTAGTGGTAGGAGTGGTAGGGAGAACCAGGGAAGGCGAAATCCGTTTTCATTTTTGTGGCGTTTCCGCAGTTCTAATTCTAGCAGCAATGATAGAGCAACCCGAAGCAGCTCACCAACACCATCATTCCCCGATAGTAGTCATCACACGGAGTATTCTGGGTGGCCATTTGAATGA 933 0.4534 MSSSRNTHWCYSCRRPIRLGWRDAVCPSCNEGFIQELNDMVHVNPLEFFGLDNNEEHDQRFGLMETFSSFMRQQMADRSHSHDIRAQSESISEQGAGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIDAMPTIKVTQRHLRSDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLVQHNSCPVCRQELPPQGLSGNQGLNGRSRGNFSGSSSGRSGRENQGRRNPFSFLWRFRSSNSSSNDRATRSSSPTPSFPDSSHHTEYSGWPFE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1524 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 2 291 - -
Ahy12g1524 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Ahy12g1524 310 Pfam Ring finger domain 185 227 IPR001841 -
Ahy12g1524 310 SUPERFAMILY RING/U-box 166 233 - -
Ahy12g1524 310 CDD RING-H2_RNF126_like 186 227 - -
Ahy12g1524 310 MobiDBLite consensus disorder prediction 236 310 - -
Ahy12g1524 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Ahy12g1524 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 291 - -
Ahy12g1524 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Ahy12g1524 310 SMART ring_2 186 226 IPR001841 -
Ahy12g1524 310 MobiDBLite consensus disorder prediction 236 264 - -
Ahy12g1524 310 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1524 Ahy-Chr12 81129700 81132632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1524 121 240 C3H Transcription Factor Family AT5G01980 40.323 2.97e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1524 K11982 - gmx:100787523 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1524 12 81129700 81132632 Ahy12g1524 12 81129700 81132632 ECH