Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1445 ATGGGTTCCCGAAAGGGTGACAACCCTCACTTCGTTGACGGTGCCAGTCCTGGGAAAATCTTTATCGGAGGTCTAGCCAAAGACACCACTTTGGATACTTTTGTTAAGTACTTCGAGAAGTACGGAGAGATAATGGACTCGGTTATCATGAAGGATCGGCATACCGGTAAACCCAGGGGTTTTGGTTTCATCACCTATGCGGATCCATCTGTTGTGGACCAGGTCATCCAGGAGAACCATGTTATCAATGGCAAACAGGTTGAGATCAAGAGGACTATTCCTAAGGGTTCATCACAAGCTAATGACTTCAAAACAAAGAAGATTTTTGTTGGTGGTATTTCAACATCGGTCACTGAAGATGAGTTTAAGAACTTCTTCTTGAAGTATGGGAAAGTTGTGGAACATGAGATTATACGTGATCACACTACTAAACGTTCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGAAAAAGTTGTTGACAATATGTTAGCAGATGGGAATATGATTGATATGTCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACTTCCTTACTATGATGGTTTTGGTGGATTTGGTGATTCTTTTGGAAGTTTTGGAAATAGCAGTTTTGATCCTGCTTCTTATAGATCACTTGGAGGATTTGGTGGTAGGCTTAGCAGTTATGGTGGATATGGCGGTGGATATGATTTTGGTGGTAGTTTTGGAGGGTCTGGTGGTGGTATTGGTGGTGGCTATGCAGGTTATCGTGGAGAATCGTCATTTGGTTACTCTAGTCGCTATGGTTCCTTCATGGGGGGCCTTGGTGATGGTTATGGTGGGAGTGGTTTAGGTGCTTATGGACGAGGTGGTGGGGCCTATGGAAGCTATGGGGGTGCGGCTACTGGCGGAGGTTATGAACCAAGATCTGGTACTGGTTATGGTGGGGCAGGAGGACATTATGGTAGTAGGGGAGGTTATGGTGGCAGTAGCCGCTACCATCCTTATGCAAGATAG 1056 0.4508 MGSRKGDNPHFVDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEIMDSVIMKDRHTGKPRGFGFITYADPSVVDQVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGISTSVTEDEFKNFFLKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNMLADGNMIDMSGTQVEIKKAEPKKSSNSASLPPFASDSRALPYYDGFGGFGDSFGSFGNSSFDPASYRSLGGFGGRLSSYGGYGGGYDFGGSFGGSGGGIGGGYAGYRGESSFGYSSRYGSFMGGLGDGYGGSGLGAYGRGGGAYGSYGGAATGGGYEPRSGTGYGGAGGHYGSRGGYGGSSRYHPYAR* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1445 351 PANTHER OS08G0320100 PROTEIN 1 351 - -
Ahy12g1445 351 SUPERFAMILY RNA-binding domain, RBD 106 270 IPR035979 GO:0003676
Ahy12g1445 351 SUPERFAMILY RNA-binding domain, RBD 16 98 IPR035979 GO:0003676
Ahy12g1445 351 Gene3D - 97 202 IPR012677 -
Ahy12g1445 351 Gene3D - 18 96 IPR012677 -
Ahy12g1445 351 SMART rrm1_1 19 90 IPR000504 GO:0003723
Ahy12g1445 351 SMART rrm1_1 107 180 IPR000504 GO:0003723
Ahy12g1445 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Ahy12g1445 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Ahy12g1445 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Ahy12g1445 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Ahy12g1445 351 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1445 Ahy-Chr12 70276380 70279569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1445 4 170 Eukaryotic Initiation Factors Gene Family AT2G23350 24.737 7.14e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1445 K12741 - gmx:100801373 439.499