Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1378 ATGGAGCCTTTGGAAATTGATCTTGTGGATATTCCTGATACTCCAGATAGATTAACTACCAGGCCTGGTGATCAGAAACATGTTCGGAATCCTGAGAAGAGGGAGAAGGGCTTCCCTGCTGCTGATGAAATGAAGAAACTCAGCAACTATATAATACTTTCCCCATCAAAGGCACCTTATCCTTCTTATAATGGCCCCTTCTTCAGAAAAACTCAAACTGAGAAAACTTTAGGACTTGGGACAGCACACTCTATTGGTGCTGAAAAGATGGAGAGAGGGAAAACTGTAAGCTCTAGATTTCCTGCTAAGTCATGTCACCATGGACCTAGGTCTGTTTTAGATTTTACTGAAGAGAATGAGAACTCCCAACAGCTGAAACCAGCTTTCTCACATCATGGATCAAGAGATAAGGCTGTTGAAGATAAGAAAGAAACAAGCGCTGGAAACACTTCATCACGAGTTGTTGCTGATTCTTCTACTGCCTTCAGACATAAAATGCTACCAGGTCCTAATATATCTCAGGAGCGTGGCAAGGGAATTGCACTGCCTAATGATTCTCATCCTCCACTAAACACTGAAAAGCAACTGTCTTTGGCCCCTCAAATTTCCACCACACCAAGAGTTAGAGGGCAGAAGAGATTGGTACGACATGGGTGTATTTCACCATATAATATTGCAAATAGAGCAAATCAAACAACTATAAAGGATGATCACCAAACCAAGGAAGTTGAAGAAAGTCATGCTGTGGATTTAGTTTCTACCAATCCAATTTCTACGATTAATGTTGAAGATATAGTTGCTGAAGAGAGAGGCTGTAATAGAGTGAAGGGAAAGCAAGCACTTATTCATCCTTCATCATATGGTCATAACCCTGGAACTGTTGGCATGGCTAGCAGCAGCCCTGCGACTGATTTTGAGGAGGGCCATTCAGCCAGTAATGCTGTAAGGAATTCACTTAAATACTCTGGGGGACAAGATGGTTGGAGAACTACACATACTCATAACAGCATTGATCAGCATCCTTATGATGTGAATGGGCATAATTTACGCAGAAGCCATGATGTTGGAAGATTTATTGCTAGACAAAATATGAACAGAATGGATAGAAGAGACACTCATAGCAGTCAAAGTGGCAAGGATGCACAAGGTTCTTCATCAGATAATGCAGCTCAAGCAACTTCACTGACAATTCGAGAGATAGATCAGTTGACTGTAACTCATCCTGCCACAGGCACACTGAGTAAAAGGCAAAAGAAACGTGGATCAACATCAGGAAATCCTGGGGAATCATCAAGCTCATCCCATAACCCTGTCTTGAATTCTGAAGTAGTCGACTTATCACCAGAACCCAGTTATCCCAACAGATTTACTGAAGGCTTAGATGACAATGACAATGACAAAGCTCGAGCAAGGCAAGTAGAAGCAGATGAGAGATTGGCACGTGAACTCCAAGAACAACTGTATCATGATGATATTTTTGAAGGGAGAGGGCAGATTGATGAACATTTAGCCTTGGCACTGCAGCAAGAGGAGAATCTTACTCGTACTTCTTTTGATAATCACCAAGCATCAAATCCTATGTTTCCGAGGGCAAATAGTCAGCCTCGTTCACGGACACATCAAAATCCTTCTAATAGGAGGAGAGTTCCACCTCAAGTTCCTTCCTCTAATAGAATGTCACAGTTGAGGTCACAGTTGAGGAGTCACATAGCAAATCGCTCCCGAAGACCAGCCATATCATCCAGAGGACGACGCCCCCGGTTTCCTGTGGATATGGACTTAAACATGAGGCTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTGCAGATTTAGGGATGGGTAATGACATCTTTCTTGCTCAACATGATTTTAATGAACATGATTATGAAATGTTGTTGGCCCTTGATGAGCAAAACCACCGACATACTGGTGCATCCTCCAATCAGATCAATAGTTTGCCGGAGTCCACCATCCAGAATGACAACTTCGCAGAGGCCTGTGCAATATGCCTTGAGACCCCAGGCAAGGGTGAAATTATTCGCCATCTTCCCTGTTTGCACAAATTTCACAAAGATTGTATTGATCCTTGGCTCCATAGGAAAACATCATGCCCGGTGTGCAAGTCATCTATCACCTAA 2148 0.4274 MEPLEIDLVDIPDTPDRLTTRPGDQKHVRNPEKREKGFPAADEMKKLSNYIILSPSKAPYPSYNGPFFRKTQTEKTLGLGTAHSIGAEKMERGKTVSSRFPAKSCHHGPRSVLDFTEENENSQQLKPAFSHHGSRDKAVEDKKETSAGNTSSRVVADSSTAFRHKMLPGPNISQERGKGIALPNDSHPPLNTEKQLSLAPQISTTPRVRGQKRLVRHGCISPYNIANRANQTTIKDDHQTKEVEESHAVDLVSTNPISTINVEDIVAEERGCNRVKGKQALIHPSSYGHNPGTVGMASSSPATDFEEGHSASNAVRNSLKYSGGQDGWRTTHTHNSIDQHPYDVNGHNLRRSHDVGRFIARQNMNRMDRRDTHSSQSGKDAQGSSSDNAAQATSLTIREIDQLTVTHPATGTLSKRQKKRGSTSGNPGESSSSSHNPVLNSEVVDLSPEPSYPNRFTEGLDDNDNDKARARQVEADERLARELQEQLYHDDIFEGRGQIDEHLALALQQEENLTRTSFDNHQASNPMFPRANSQPRSRTHQNPSNRRRVPPQVPSSNRMSQLRSQLRSHIANRSRRPAISSRGRRPRFPVDMDLNMRLDILEALEDAVGDFADLGMGNDIFLAQHDFNEHDYEMLLALDEQNHRHTGASSNQINSLPESTIQNDNFAEACAICLETPGKGEIIRHLPCLHKFHKDCIDPWLHRKTSCPVCKSSIT* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1378 715 MobiDBLite consensus disorder prediction 362 376 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 130 147 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 518 586 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 323 342 - -
Ahy12g1378 715 Coils Coil 465 485 - -
Ahy12g1378 715 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 468 713 - -
Ahy12g1378 715 SUPERFAMILY RING/U-box 669 714 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 115 129 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 10 36 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 362 466 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 1 36 - -
Ahy12g1378 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 715 IPR013083 -
Ahy12g1378 715 SMART ring_2 670 710 IPR001841 -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 323 349 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 88 177 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 377 441 - -
Ahy12g1378 715 CDD RING-H2_PA-TM-RING 670 711 - -
Ahy12g1378 715 Pfam Ring finger domain 669 711 IPR001841 -
Ahy12g1378 715 ProSiteProfiles Zinc finger RING-type profile. 670 711 IPR001841 -
Ahy12g1378 715 PANTHER - 468 713 - -
Ahy12g1378 715 MobiDBLite consensus disorder prediction 518 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1378 Ahy-Chr12 62785033 62794567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1378 1 715 C3H Transcription Factor Family AT1G04790 32.982 5.32e-82 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1378 - - aprc:113872307 821.231