Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1258 ATGCTAATTTCAGAGTTTCTTTCAGATGGAATGGCAGATCCAGCTAGTTATGGGAATTATGACCGTGATATTGAGCAAGCACTAATTATTTTAAAAAAGGGCAGCCAATTAGTAAAGTATTGTCGAAAAGGGAAGCCAAAAGTTGTTCCATTTAGGCTCTCAGCAGATGAAACAAAGCTGATTTGGCTTTCTCGTGGAAAGGAAAAGAGTCTAAAGTTATCTTCTGTTTCACGCATCGTCCCTGGACAGAGAACAGCTGTCTTTAGAAGATATTTGCGCCCTGAAAAGGACTACCTGTCATTTTCACTTATTTACAAAAAAGGGGAACGATCACTTGATTTGATCTGCAAGGACAAAGCTGAGGTGGAGGTATGGTTTGCGGGCCTTAACGCATTAATATCTTCTGGACATAATAGTAAGCGCCCTAGAAGTGAGTTTACAGATGATTGTTCTGACTTTGCTCATAATGAACGTCCTTTTGGAGTGGCATTAGAGTTTGCTTCAACCATCGCCCGTGGCAGGTTTTCTGTGGATTCATCTTCTCATGAGTCTTCATTGGATTCAGCTGGATCAGATGTGGCACCAGAAGCTTCAAATATGCCACTGAGGACAAGTGGAGGAGATGGTTCTTCTCGTATCAGTGTGTCAAGTGTTGGCTGTGCAAGTAGTGTATTGTCCGGACAAGACGACATAGAATCTCTCGGAGATGTCTTCATATGGGGAAGAATTTGGGCACATGGAGCCTCACACGATGGGTTTGGGAGTCAGGTCCTTTCGACAAAGAATGTGCTAACTCCTAAGTCATTAGAGTCTAATATTGTTATTGATGTCCATCAGATCGGGTGTGGTGTACATCACATTGCTCTCATTACAAGGCAAGGAGAGGTGTTTACATGGGGAGATGACTCTGGAGGGAGACTTGGTCATGGGCTTCATAAAAATCGTGGGAGACTGCAACTCGTGGAGTCTTTAGCTGTTACTAGTGTAGGTTTTGTTGCATGTGGTGAATACCATACTTGTGCTCTGTCTACACATGGTGATATATTTACTTGGGGTGATGACATACATAATGCAGGACTTCTTGGGCATGGCACTGAAGTGAGCCATTGGATACCAAAGAAGATTGGAGGACCTTTAGATGGACTTCTCGTTGTATCTGTAGCATGTGGCACATGGCATTCAGCATTGGTTACCTCCATTGGAAAACTGTTTACCTTTGGTGATGGAAAATTCGGTGTCTTGGGCCATGGAGATCGAGATAGTGTATCATATCCGAAGGAGGTGCGCCTAATGTGTGGACAAAGGGCAATCAAAGTTGCATGTGGAGTATGGCACACTGCAGCAATTATAGAGGTTGTTGATCATTGTGGTACAAATGCATCTTCATCTAGGAAGCTTTTCACATGGGGCGATGGCGACCAATATCGTCTTGGCCATGCTAGCAAGGATACCTATCTTCAACCAACTTGTGTCTCTGCACTGAGTGACTATAGTTTTCATCAGGTAGCATGTGGGACCACTATGACTGTTGCCCTCACTGCCTCTGGTCAGGTCTTTACTATGGGAGAAACTAAATATGGTCAACTAGGAAATCCAATGTCCAATGGAAGAACACCAAGTCTGGTCAAAGATAATTTAGTAGGCGAGGTTGTAGAGGAAATATCATGTGGTTCACATCATGTTGCTGTGGTGACTTCAAAAGGTGAACTATATACATGGGGCAGAGGTGCCAATGGAAGATTGGGACATGGAGACACAGATGACCATAACACACCAATTTTGGTTGAAGCTTTTAGAGACAGACACGTAAAGCATGTTTCGTGTGGTTCAAGCTTTACATTTTGTGTATGCATACATAAGTGGATTTCTGGAGCTGACCAATCACTTTGCTCTGGTTGCCGGCAACCATTTGGTTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTATTGCCATCCTTGTAGCTCCAAAAAGTCAATAAGAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATTCTTGTTATTCCAAGCTTAAAGTTCATGAGACTAGCAGTGCTTCTTCCACTTATAATAAGGATGTTACTCGTGCTCATAGAAAGGAAAGATTTGATACAAGAGAGGCAAAGAATGCGAAAATTCTCTCATCTCGCAGCACCGATCCTGTAAAATACTTTGAGACATTGACGGGTAAGAATATAACTTTGCATGACTTTTCTTCCACAGTCCGAGTTGCTCAAGCTCCTTTGCGTATTCCAATGGATGATGTGTTTCCAAGTTCATCTAGTGTCATGCAGAATGCTTCTGTTCCCATTACACAATCAAGTCAACCTCCAACTCCACCTACACCAAGTAATTTAAGACCTCCATCACCGTATGCAAGGAGACCAAGTCCACCACGTTCTACTTCCCCCGGATTTTCAAGAAGCCTCATTGATAGTTTAAAGAAGACAAATGATCTTTTGAATCAAGAAGTCTCTAAATTAAAAAACCAAAATCAAAATTTGAAGCAGAAGAGTGACATGCAAGATATCAAGATTCGGGAACTTGAGAAAAAGATTGAGGAATCTACCTCATTGATTAAAGAGGAATCATCTAAGCATAGAATACTGAAGGAATATCTCCAGTGCATGACAGATCAGTTGAGGGAAGTGACTGAGAACTTGCCACCAGTTCCTGACTATGAATCTTTAATAACCTTGCATACTCATGCTGAGACATTTCTTAAAGAAAATATGGAATTCAAATCCTTATTTGCATCAACGTTGGAATCAAAGTCACAAAGTGCAAATGATATACATGGCGCAGACAATGACTCTCGTAAACAGCCAGAACAAAAAATGGAAGAAACCGTTGATGCTGCTGAAGCTGGTTCATCTATGAATGGAGGAAATGCTCTTCAAGAAAGCAATGAGTCATCTTTGTTGAGTCCAAATAAGCCAAGATCATCTAATCCTCACAGACCCGGGAATGAGAAACAAGAAGAAATAGTGACCATCGAACAATTTGAACGTGGTGTTTATGTAACATTTGTAGAATTACCTTCTGGTGGAAAAGTTTTTAAACGAATTAGATTCAGTAAGCGCAAATTTGACGAGACTCAAGCAGCAGAATGGTGGAACCAAAACAAAGATAGGGTGCTTATGAAATATAGTCCAGAATCTGTACAGGATGCAGCTACTGGCTCATCTATTAGCCCTACCAGAAGTTGA 3231 0.4163 MLISEFLSDGMADPASYGNYDRDIEQALIILKKGSQLVKYCRKGKPKVVPFRLSADETKLIWLSRGKEKSLKLSSVSRIVPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFAGLNALISSGHNSKRPRSEFTDDCSDFAHNERPFGVALEFASTIARGRFSVDSSSHESSLDSAGSDVAPEASNMPLRTSGGDGSSRISVSSVGCASSVLSGQDDIESLGDVFIWGRIWAHGASHDGFGSQVLSTKNVLTPKSLESNIVIDVHQIGCGVHHIALITRQGEVFTWGDDSGGRLGHGLHKNRGRLQLVESLAVTSVGFVACGEYHTCALSTHGDIFTWGDDIHNAGLLGHGTEVSHWIPKKIGGPLDGLLVVSVACGTWHSALVTSIGKLFTFGDGKFGVLGHGDRDSVSYPKEVRLMCGQRAIKVACGVWHTAAIIEVVDHCGTNASSSRKLFTWGDGDQYRLGHASKDTYLQPTCVSALSDYSFHQVACGTTMTVALTASGQVFTMGETKYGQLGNPMSNGRTPSLVKDNLVGEVVEEISCGSHHVAVVTSKGELYTWGRGANGRLGHGDTDDHNTPILVEAFRDRHVKHVSCGSSFTFCVCIHKWISGADQSLCSGCRQPFGFTRKRHNCYNCGLVYCHPCSSKKSIRAALAPTPSKPHRVCDSCYSKLKVHETSSASSTYNKDVTRAHRKERFDTREAKNAKILSSRSTDPVKYFETLTGKNITLHDFSSTVRVAQAPLRIPMDDVFPSSSSVMQNASVPITQSSQPPTPPTPSNLRPPSPYARRPSPPRSTSPGFSRSLIDSLKKTNDLLNQEVSKLKNQNQNLKQKSDMQDIKIRELEKKIEESTSLIKEESSKHRILKEYLQCMTDQLREVTENLPPVPDYESLITLHTHAETFLKENMEFKSLFASTLESKSQSANDIHGADNDSRKQPEQKMEETVDAAEAGSSMNGGNALQESNESSLLSPNKPRSSNPHRPGNEKQEEIVTIEQFERGVYVTFVELPSGGKVFKRIRFSKRKFDETQAAEWWNQNKDRVLMKYSPESVQDAATGSSISPTRS* 1077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 777 816 - -
Ahy12g1258 1076 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 23 1062 - -
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 933 1003 - -
Ahy12g1258 1076 CDD PH_PLC_plant-like 22 134 - -
Ahy12g1258 1076 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 624 686 IPR017455 -
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 345 IPR000408 -
Ahy12g1258 1076 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 23 1062 - -
Ahy12g1258 1076 Pfam FYVE zinc finger 620 685 IPR000306 GO:0046872
Ahy12g1258 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 687 IPR013083 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 505 523 IPR000408 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 346 362 IPR000408 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 296 312 IPR000408 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 563 584 IPR000408 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Ahy12g1258 1076 PRINTS Chromosome condensation regulator RCC1 signature 403 417 IPR000408 -
Ahy12g1258 1076 Gene3D - 358 457 IPR009091 -
Ahy12g1258 1076 Gene3D - 178 357 IPR009091 -
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 941 958 - -
Ahy12g1258 1076 SMART fyve_4 616 687 IPR000306 GO:0046872
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 401 452 IPR000408 -
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 346 400 IPR000408 -
Ahy12g1258 1076 Coils Coil 818 873 - -
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 781 805 - -
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 182 211 - -
Ahy12g1258 1076 Gene3D - 458 632 IPR009091 -
Ahy12g1258 1076 SUPERFAMILY FYVE/PHD zinc finger 620 694 IPR011011 -
Ahy12g1258 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 439 449 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 401 449 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 346 396 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 294 342 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 466 512 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 567 616 IPR000408 -
Ahy12g1258 1076 Pfam Regulator of chromosome condensation (RCC1) repeat 515 564 IPR000408 -
Ahy12g1258 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 280 290 IPR000408 -
Ahy12g1258 1076 MobiDBLite consensus disorder prediction 967 991 - -
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 464 515 IPR000408 -
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 516 567 IPR000408 -
Ahy12g1258 1076 Gene3D - 23 142 IPR011993 -
Ahy12g1258 1076 SUPERFAMILY PH domain-like 23 133 - -
Ahy12g1258 1076 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1057 IPR013591 -
Ahy12g1258 1076 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 568 619 IPR000408 -
Ahy12g1258 1076 Pfam Pleckstrin homology domain 25 133 IPR001849 -
Ahy12g1258 1076 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 387 397 IPR000408 -
Ahy12g1258 1076 ProSiteProfiles BRX domain profile. 1003 1058 IPR013591 -
Ahy12g1258 1076 CDD FYVE_like_SF 630 682 - -
Ahy12g1258 1076 SUPERFAMILY RCC1/BLIP-II 235 621 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1258 Ahy-Chr12 40759612 40768561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1258 1006 1058 Major Intrinsic Protein MIP AT1G31880 47.170 1.49e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1258 - - gmx:100812689 1322.76