Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1218 ATGGTTTCTTCCCAAGCCACAACACGTAGAAGGAAGATTGAGATCAAGAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAGTTAGGGCTTTTCAACAAGGTCACGGAGCTCTCCATCCTCTGCCAGGCGGAAACCGCCTTAATCATCTCGTCGCAAAACGGAAAGCTTTATGCGTGCGGGTATCCGTCGCCGGATGCGGTGATCTGGCGCTTCCTCTACGGAGAAGATTCCCCGCCTCCGCAGAGGAACGACGTGCGTTTCTTGAAGAAGAAGCAAAAGGAGAACGTGGAAGCCCAAAGGGCGCAGTACGAGTCTGCTCAAGAAGCCCTCAAAGAAGAGAAGAAGCGACTCGACGAGACCAAGAAGGAAATAAACAGCGACAACAATGGCGGTTGCTTAGGGTTTTCGCAGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTCAAGTTCAAAGAATCGTTGGAACAGTTGAAGACGAACCTGATTGCAGCCACTGACAATAAGATCAACATGTTCCAACAAATGATGATGCCATCACCACTTGCTGCTCCTTCTTTAATCATGCCTCCAATGCAAACTAGGTTTTCCAATTTTAATTCAGTCTTGAATAATAATCACGGTGGATTCAGCGCTGTTTATCAACCACAACAGCAAGAATATTGGGATTGGACCCGTAATAACGTCATCAATAATAATGGAATAATTGCTAGTAGTAGTAGTAGTAACAATCTTAATCCTTTATTAGGAAGATGGGATTCTGGGAACAATGCTATTATGGTTGATGTTAATGGTAATGGGAGTAGTGGTTGTTCCTTTTTTCCGAACATTGGTTTTGGCCATTATTAA 873 0.4479 MVSSQATTRRRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIISSQNGKLYACGYPSPDAVIWRFLYGEDSPPPQRNDVRFLKKKQKENVEAQRAQYESAQEALKEEKKRLDETKKEINSDNNGGCLGFSQWWENPIDDMDLEELVKFKESLEQLKTNLIAATDNKINMFQQMMMPSPLAAPSLIMPPMQTRFSNFNSVLNNNHGGFSAVYQPQQQEYWDWTRNNVINNNGIIASSSSSNNLNPLLGRWDSGNNAIMVDVNGNGSSGCSFFPNIGFGHY* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1218 290 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 Coils Coil 156 176 - -
Ahy12g1218 290 PANTHER MADS BOX PROTEIN 6 178 - -
Ahy12g1218 290 SUPERFAMILY SRF-like 9 77 IPR036879 GO:0003677|GO:0046983
Ahy12g1218 290 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 Gene3D - 21 128 IPR036879 GO:0003677|GO:0046983
Ahy12g1218 290 Coils Coil 94 135 - -
Ahy12g1218 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Ahy12g1218 290 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 6 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1218 Ahy-Chr12 36893525 36894397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1218 10 167 Type I MADS-box Gene Family AT5G60440 36.076 4.02e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy12g1218 SRF-TF 4.30E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1218 - - aip:107627188 565.844