Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1193 ATGGGTAACTCTCACTCACATCGCAAACACCGTAACTCCCTCTCTCAAAACAATAACTCTTCTTCTTCTTCTGTTGCTACTCCTCCACACTATAAATATGGTGCTCATCATTATCCACAACAACAACACAATAATAGGACGATGGTGAGGAATAAGGTTTCTTTGCCTTACGGGCGCGTGGACACCACGCTCCGAGAACTCGCTGCAAAGGCCGAAGGCTTTGGACGCTTCGCCATCGGCGGCCTCCACGGTCCGCTATACCGTGTCACTAGTCTTGCAGATGATGGACCAGGATCACTACGCGATGCATGTCGTAGAAAAGAACCATTATGGATTGTATTTGAGGTTTCAGGCACAATTCATCTGTCATCATATTTGAATGTATCATCTTACAAGACCATTGACGGCCGGGGCCAGAGGATTAAACTCACCGGTAAAGGATTGCGGCTCAAGGAATGCGAGCATGTAATAGTGTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGCCATTCAAATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGTACTCTCTGTGATTTCGAAGATGGGCTGATAGACATCACCAGAGAAAGCACAGATATTACAATTTCAAGGTGTCATTTTTCTAAGCATGACAAAACAATTCTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATAAGGGTCACCATTCATCATTGCTTCTTCGATGGGACTCGACAGAGGCATCCTCGCGTTCGATTTGCAAAAGTTCATCTGTATAACAATTATACCAGAAACTGGGGCATATATGCTGCTTGTGCAAGTGTGGAGTCCCAGATATTCTCGCAACATAATATTTATGAAGCAGGGCAAAAGAAGGTAGCATTCAAGTACCTTTCTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGCCGCATAATATCCGAAGGAGATTTGTTTATAAATGGAGCACAATCAGGGCTAATAGCATCTAACAATCTTGAATGTAACAATTTTCATCCTAGGGAACACTATCTGGCATGGACGGTGGAACCTCCTTCAGATGATCTAAAACAGGTTCTTCAGCATTGCACTGGATGGCAATCTATGGCGAGGCCATTAGACCAAACGGTTGAACACGGTGCACATGATGAAGCAGTACCTATTTATCCATTCCAAACTCACAGCATTGTAGCCAGTTTGCCTTATGCACGAGTGGACTCCTCCCTCCGAGCACTTGCTGGCTCGGCCGAGGGATTTGGACACTTTGCCATTGGTGGCCTCCGTGGTCCCCTTTATCATGTAACAACTCTAGCAGATGATGGACCAGGGTCGCTGCGTGATGCATGTCGCAGAAAAGATCCTTTGTGGATTGTATTTCAAGTTTCAGGCACAATTCATCTGTCTACATTTTTGAGTGTATCATCTTATAAGACCATCGATGGCCGGGGCCGAAGGATTAAACTCACCGGAAAAGGATTGCGGCTGAAGGAATGTGAGCATGTAATAGTTTGTAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATAGTGATGCCATTCAGATCAAGCCTAATTCGAAGCACATATGGATAGATCGTTGTAGCCTCAGTGATTTCGACGATGGACTCATAGACATCACTAGAGAAAGCACGGATATTACCATTTCAAGGTGTCATTTTTCTAAGCACAACAAAACAATTCTCATCGGAGCAGATCCCTCGCATGTTGGGGATAGGTGCATAAGGGTCACCATTCACCACTGCTTTTTCGATGAGACTCGACAGAGGCATCCTCGTGTTAGATTTGCAAAAGTACATATTTACAATAATTATAGCAGAAACTGGGGTATATATGCTGTTTGTGCAAGTGTGGAATCACAGATATTCTCACAACATAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAAGGCAGCAGACAAGGGAGAAGAAGCAAGTGGCCGCATAATTTCTGAAGGAGACATGTTTATAAATGGAGCACAGTCAGGGCTAATGACAGAGAACAATGATGGAAGTAACATTTTTCATCCAAGTGAATATTATCCCACTTGGACAATGGAACCTTCTTCAGATAATCTAAAACAGGTTCTTCAGTACTTCACTGGATGGCAATCTATTGCCAGGCCAGAAGATTAA 2184 0.44 MGNSHSHRKHRNSLSQNNNSSSSSVATPPHYKYGAHHYPQQQHNNRTMVRNKVSLPYGRVDTTLRELAAKAEGFGRFAIGGLHGPLYRVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDAIQIKPNSKHIWIDRCTLCDFEDGLIDITRESTDITISRCHFSKHDKTILIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAACASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGAEASGRIISEGDLFINGAQSGLIASNNLECNNFHPREHYLAWTVEPPSDDLKQVLQHCTGWQSMARPLDQTVEHGAHDEAVPIYPFQTHSIVASLPYARVDSSLRALAGSAEGFGHFAIGGLRGPLYHVTTLADDGPGSLRDACRRKDPLWIVFQVSGTIHLSTFLSVSSYKTIDGRGRRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDSDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSKHNKTILIGADPSHVGDRCIRVTIHHCFFDETRQRHPRVRFAKVHIYNNYSRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLSEKAADKGEEASGRIISEGDMFINGAQSGLMTENNDGSNIFHPSEYYPTWTMEPSSDNLKQVLQYFTGWQSIARPED* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1193 727 PRINTS Pollen allergen Amb family signature 474 490 IPR018082 -
Ahy12g1193 727 PRINTS Pollen allergen Amb family signature 419 436 IPR018082 -
Ahy12g1193 727 PRINTS Pollen allergen Amb family signature 621 640 IPR018082 -
Ahy12g1193 727 SUPERFAMILY Pectin lyase-like 69 376 IPR011050 -
Ahy12g1193 727 PANTHER PECTATE LYASE 18-RELATED 50 376 IPR045032 GO:0030570
Ahy12g1193 727 Gene3D - 406 716 IPR012334 -
Ahy12g1193 727 Gene3D - 57 354 IPR012334 -
Ahy12g1193 727 MobiDBLite consensus disorder prediction 13 28 - -
Ahy12g1193 727 MobiDBLite consensus disorder prediction 1 43 - -
Ahy12g1193 727 Pfam Pectate lyase 475 637 IPR002022 -
Ahy12g1193 727 Pfam Pectate lyase 125 288 IPR002022 -
Ahy12g1193 727 PANTHER PECTATE LYASE 18-RELATED 400 724 IPR045032 GO:0030570
Ahy12g1193 727 SMART amb_all 446 644 IPR002022 -
Ahy12g1193 727 SMART amb_all 97 295 IPR002022 -
Ahy12g1193 727 PANTHER PECTATE LYASE 400 724 - -
Ahy12g1193 727 SMART pbh1 605 627 IPR006626 -
Ahy12g1193 727 SMART pbh1 153 178 IPR006626 -
Ahy12g1193 727 SMART pbh1 529 550 IPR006626 -
Ahy12g1193 727 SMART pbh1 204 225 IPR006626 -
Ahy12g1193 727 SMART pbh1 553 574 IPR006626 -
Ahy12g1193 727 SMART pbh1 502 527 IPR006626 -
Ahy12g1193 727 PANTHER PECTATE LYASE 50 376 - -
Ahy12g1193 727 SUPERFAMILY Pectin lyase-like 417 721 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1193 Ahy-Chr12 33508821 33515745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1193 405 727 Polysaccharide Lyase AT3G09540 66.873 6.64e-156 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1193 K01728 - ecad:122607709 1038.87