Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1184 ATGGAATCCATAAGCTCGAATGATGAGGTTGTTCCAAGCATAGGAATGACATTCCCCTCTGTGAAAGATTATGAAACTTTTTATACCAATTATGCAAAGAGGGTTGGTTTTTCATGGAATATAAGAACTACTAAGTGGAATCAAAATAGACAGATTACATATCAAATCTTAGTATGTTCTAAAGCTGGTTATCAAAGATCAAAAATTGATCCACTAAAGAAGACAAATCTAACTTCCGAGCAAAATTGTAAAGTTAGGATTATTGTGAAAAAGGACAAGAAGCTGGAATATGTGTTAACCTTTGTGAATAACCAGCACAATCATGTTATTAGTCCTAGCATGGCAAACACTCTGAGAAAGAATAGGGAACTAAGCTTGCATGCCAAATGGATAGCTGAGATCAATGATCAAGCTGGTGTTACAATGAGAAACAGATATCAGAGTTTAGCAACTACTGCTGGTGGCTATGATAAATTGACTTTTAATGAGAAAGATCTTCGGAATCATGTAGCAAAAAGTGATGCAACAACAAAACCGCAACTTCTTTATGAAGTTAAATTGGACGAGCAACATCTCATAGAGCATGCTTTATGGGCTGATGCTAGAAGTCGTGCTGCTTATGAGCACTTTGGCGACGTTGTGAGCTTTGATATGACGGATAGGGATAGAGATAGGTATGATATGCCTTTTGCCTCATTTGTTGGGGTTAACCACCATGGCCAATCATTGCTACTTGGCTGCGTTATTCTTTCATGCGAAGAAGAGAGTTCCTTTGTTTGGTTATTTGATTGTTGGATACGATGTATGGGTGGCAAGCCGCCTATTGGCATATTAACGGATCAATGCAAAGCTATGCAAAATGCCATTGAAAAATCATTGCCAATGACACAATATCGATGGTCTAAGGAAGCATTTGAGAGCTCTTGGACTGATTTTATCAATATATTCAGTTTACATAATAATTGGTTAGCAGGTTTGTACGAAGAACGTGACAAGTGGGTCCTAATTTTTCTTAGTAATAGTTTTTGGGTAGGCATGAGTAGCACTCAAAGGAGTGAAAGCATGCATTCATTTATGAAGGGCTACCTAACCTCAAAGAGCAACTTGCAACAATTTGTAACACAACATGACAACTGTCTTGTAAATAAAGCTCAAAAAGAATATGAATTGGATGCTGCCAGCTTCAATACTATTATCCCTTGTGCTACTGCCTCTGCTATTGAAAAACTATTTCAAAAGGAATATTCTCATGCAAAGTTTAATGAGCTTCAAAAGGAGTTTAGAGCAAAGGCTAATTGCTTTTCAACAAAAGAGCATGAACAGGGATATATTGTTACTTACAAGGTTATAGAAGAGATTGAGAATGGTGATAAGATGTTTGATTCTATGTATGAGGTGTTGTTTGATTCTTCAACTTCAGATGTTTCTTGCCAATGCCATCTTTTTGAGTCAAAGGGAATCTTATGCTGCCATACTCTTTCAGTCCTTGGTCTTGTAAGAGTGAAGAAATTGCCAAATAAGTACATTCTTGATCGGTGGAAGAAAACTTTAAAGCACAAGCACATAGCATCAAGTGTAGCCATGATCCAAGCCGTTTAG 1599 0.3715 MESISSNDEVVPSIGMTFPSVKDYETFYTNYAKRVGFSWNIRTTKWNQNRQITYQILVCSKAGYQRSKIDPLKKTNLTSEQNCKVRIIVKKDKKLEYVLTFVNNQHNHVISPSMANTLRKNRELSLHAKWIAEINDQAGVTMRNRYQSLATTAGGYDKLTFNEKDLRNHVAKSDATTKPQLLYEVKLDEQHLIEHALWADARSRAAYEHFGDVVSFDMTDRDRDRYDMPFASFVGVNHHGQSLLLGCVILSCEEESSFVWLFDCWIRCMGGKPPIGILTDQCKAMQNAIEKSLPMTQYRWSKEAFESSWTDFINIFSLHNNWLAGLYEERDKWVLIFLSNSFWVGMSSTQRSESMHSFMKGYLTSKSNLQQFVTQHDNCLVNKAQKEYELDAASFNTIIPCATASAIEKLFQKEYSHAKFNELQKEFRAKANCFSTKEHEQGYIVTYKVIEEIENGDKMFDSMYEVLFDSSTSDVSCQCHLFESKGILCCHTLSVLGLVRVKKLPNKYILDRWKKTLKHKHIASSVAMIQAV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1184 532 ProSiteProfiles Zinc finger SWIM-type profile. 464 500 IPR007527 GO:0008270
Ahy12g1184 532 Pfam FAR1 DNA-binding domain 26 110 IPR004330 -
Ahy12g1184 532 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 301 IPR031052 GO:0006355
Ahy12g1184 532 Pfam MULE transposase domain 213 300 IPR018289 -
Ahy12g1184 532 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 302 524 IPR031052 GO:0006355
Ahy12g1184 532 PANTHER OS03G0843700 PROTEIN 6 301 - -
Ahy12g1184 532 SMART 26again6 475 502 IPR006564 GO:0008270
Ahy12g1184 532 PANTHER OS03G0843700 PROTEIN 302 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1184 Ahy-Chr12 32995742 32998490 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy12g1184 MULE 5.90E-18 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1184 - - aip:107627133 1083.94