LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy12g1168	ATGCCCAGCTGGAGCACCAAGGATTTGTTAGTGGTTCTTGCTTTGGCAGTTACGGCCTCGAGCTTATTGAATGGGGTGAAGTGCCAGCAAATGAGTGACCTTGACAACCCTGCTGTTCTCTCTGTTTTGACACAGCTTGTTTACAGCCAAGTCTCCAACGTCACCTCTTTCCTCAGTCACGAAATTAGCAACCGCTCCAGTTTCTGCGTCGAAGATCTGAATGCTGATTGGAATAATGCATTTAACTTTTCATCTGACTTGGGCTTCTTGACTTCTTGCATTCAAAAGACGAAAGGGGACATAAAGCAACGCATATGTAATGAAGCCGAAATAAAGTTTTACTCAAATAGTTTATTGGATAGATCTAATGGTATTAACTATTTGAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTATCTGGTTGTGAGCCAGGATGGGCCTGTAGTGCTCCCTCGACCGAGCAGGCTGAACTCCAAAATTCACAGGATATGCCTTCAAGAACTACTGACTGTGAACCATGTTGTGAAGGTTTCTTTTGCCCTCATGGTATCACATGCATGATACCTTGCCCTCTTGGATCCTATTGTCCTCTTGCAAAACTCAATAACACAACTGGTGTATGTGAACCATATCGTTATCAATTGCCTCCAATGCGGCCAAACCATACCTGTGGAGGTGCAAATATTTGGGCTGATGTTGATAGCGGTAGTGAGACATTCTGTCCAGCAGGATGGTATTGCCCAACAACTACAAAACGTATTCCTTGCAGTAGTGGGCATTACTGTAGGATGGGTTCTATATCTCAGACAAGATGCTTCAAGTTGACTTCATGTAAATCGAAAGCTGAGACCCAAAACATGGGTGTGTACGGAATTATGCTCATTGCTGCTTTGAGTACATTGCTGATTATCATTTACAGCTGTTCTGATCAAGTTCTCAGTACTAGGGAAAGGAGAATGGCGAAGTCCAGAGAAGCAGCAGCTAGATCTGTAAGGAAGACTTCAAATGCACGACAAAGATGGAAAACTGCAAAAGATGTTGCTAAAAAGAGTGCAAGTGGACTACAAGCTCAACTATCACGAACATTTTCGCGTAAGAAGGACGTAGCAGATCCAGAAAAAGTTAAAATATTGGGTCAAGCAACTTCAGAAACTGATATAGAATTGCTTTCACATTCACACCCTATTACTCCAAACATTGCTTCCAGCTCATCAGCTGTTCAAAAAGAAAAGGCTAAAGAATCCATTGATACGATGCAGATGATGCATGAAATTGAAAATGACGATAACCTTCACTTAGAAACTAAAACTAGAGATAAAAGTGTCCAAGGCAAAGCTTCTAAGGAAAAGCAACCTGAAACTCATAGCCAGATTTTTAAGTATGCATATGCTCAATTGGAGAAGGAGAAGGCACAGCAACAAGAAAACAAGAATCTTACTTTCTCAGGAGTAGTTAACATGGCTACCAAAGGTGAACCAAGGAAACGGCTGTTAATGGAAATTTCTTTCAAAGATCTAACTCTCATTTTGAAGGTGCAAAACAAACTTATATTGAGATGTGTAACGGGGAAAATTAAACCTGGGCGCATTACTGCTGTCATGGGTCCATCAGGGGCCGGTAAGACAACATTTCTTTCAGCAGTAGCTGGAAAAGCATTTGGATGCAAGATGACTGGTTCAGTTCTTATAAATGGAAAGACTGAATCAATCCACTCCTATAAGAAAATTATTGGTTTTGTGCCACAAGATGACATAGTTCATGGAAATCTGACAGTAGAAGAGAATTTATGGTTCAGTGCACAGTGCAGGCTATCTGCTGACTTGCCGAAAGCAGACAAAGTTCTGGTTGTAGAAAGAGTTATTGAATTCTTGGGCCTTCAATCTGTGCGGAATTCTTTGGTTGGAACTGTAGAAAAACGAGGGATTTCCGGTGGCCAAAGGAAGCGTGTAAATGTTGGACTGGAAATGGTCATGGAACCTTCACTTTTATTGTTAGATGAACCCACATCTGGTTTGGACAGTGCATCATGTCAGCTACTTCTTAGAGCATTAAGACGGGAAGCTCTTCAAGGAGTGAACATATGCATGGTGGTTCACCAACCAAGCTATGCATTGTTCAATATGTTTGATGAGTTGATACTTCTGGCGAAAGGAGGTCTTACTGTGTATCATGGACCTGTCAAGAAAGTTGAAGAATACTTTCTAGGACTTGGGATCTGTATTCCGGAGCGGATCAATCCTCCTGATTACTTTATCGACATTTTGGAGGGCATAGTAGAACCTGGTGGAAGCTCGGGAGTCAGTTATAAAGACCTGCCAGTTAGATGGATGCTTCATAAGGGATACCCAGTACCTCTTGATATGCAGAAGAATGCAGTGAAATTTGGTAACTTAACTCCAAATCCAGCTAAAGAAACTGATCCCAATGGCTCTGGACATGACGAAAGAAGCTTTGCCGGAGAACTATTGCATGATGTTAGACACGTCGTTGAATTGGAGGGGGAGAAGATACTATTCAACTTTTTGAAATCCCAGGATTTATCTAACCGGAAAACTCCTGGGATATTCAAGCAATACAAGTACTTCCTTATACGGATTGTGAAGCAGCGACTAAGGGAGTCTAAAATCCAAGCTATAGATTATCTAATATTATTACTTGCTGGAGCTTGCTTAGGAGCGCTGAGTAGAGGAAATGATCAGAAGTTTGGTGGAGATGGATACATCTATACAGTGATTTGTGTATCTCTTTTATGTAAAATTTCGGCCTTGAGATCATTTTCTCTGGATAAATTGCACTACTGGAGGGAGAGGGATTCTGGGATGAGCAGCTTGGCTTACTTTCTTTCTAGAGATACAATGGATCATTTTAATACTCTGGTTAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTCACCTATCCAAGATCAACTTTTGCGGATAATTACATTGTGCTGCTCTGTCTAGTATACTGTGTGACTGGAATAGCATATACATTGGCAATAGTATTCAAACCTGGCGCGGCACAGCTATGGTCAGTGCTTCTTCCAGTTGTTTTAACCCTTGTTGCAACACAAGCTAAAGACAGTAAATTTTTGAAGGTTCTAGCAAATTTATGCTACCCTAAGTGGGCTTTAGAAGCATTCGTAATCGCAAATGCTGAAAGGTACCATGGAGTGTGGATCATAAGTCGTTGTGGTTCACTAAAGAGAAGTGACTATAATATTCATGATTGGAGTTTGTGTGTTTCCATCCTAATTCTTATGGGTGTAACCGCTCGGGCAATAGCTTTATTCTCTATGCTTACCTTTCAAAAGAAGTGA	3327	0.4118	MPSWSTKDLLVVLALAVTASSLLNGVKCQQMSDLDNPAVLSVLTQLVYSQVSNVTSFLSHEISNRSSFCVEDLNADWNNAFNFSSDLGFLTSCIQKTKGDIKQRICNEAEIKFYSNSLLDRSNGINYLKPNKNCNLTSWVSGCEPGWACSAPSTEQAELQNSQDMPSRTTDCEPCCEGFFCPHGITCMIPCPLGSYCPLAKLNNTTGVCEPYRYQLPPMRPNHTCGGANIWADVDSGSETFCPAGWYCPTTTKRIPCSSGHYCRMGSISQTRCFKLTSCKSKAETQNMGVYGIMLIAALSTLLIIIYSCSDQVLSTRERRMAKSREAAARSVRKTSNARQRWKTAKDVAKKSASGLQAQLSRTFSRKKDVADPEKVKILGQATSETDIELLSHSHPITPNIASSSSAVQKEKAKESIDTMQMMHEIENDDNLHLETKTRDKSVQGKASKEKQPETHSQIFKYAYAQLEKEKAQQQENKNLTFSGVVNMATKGEPRKRLLMEISFKDLTLILKVQNKLILRCVTGKIKPGRITAVMGPSGAGKTTFLSAVAGKAFGCKMTGSVLINGKTESIHSYKKIIGFVPQDDIVHGNLTVEENLWFSAQCRLSADLPKADKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLLLDEPTSGLDSASCQLLLRALRREALQGVNICMVVHQPSYALFNMFDELILLAKGGLTVYHGPVKKVEEYFLGLGICIPERINPPDYFIDILEGIVEPGGSSGVSYKDLPVRWMLHKGYPVPLDMQKNAVKFGNLTPNPAKETDPNGSGHDERSFAGELLHDVRHVVELEGEKILFNFLKSQDLSNRKTPGIFKQYKYFLIRIVKQRLRESKIQAIDYLILLLAGACLGALSRGNDQKFGGDGYIYTVICVSLLCKISALRSFSLDKLHYWRERDSGMSSLAYFLSRDTMDHFNTLVKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYTLAIVFKPGAAQLWSVLLPVVLTLVATQAKDSKFLKVLANLCYPKWALEAFVIANAERYHGVWIISRCGSLKRSDYNIHDWSLCVSILILMGVTARAIALFSMLTFQKK*	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy12g1168	1108	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	502	733	IPR027417	-
	Ahy12g1168	1108	SMART	AAA_5	528	720	IPR003593	-
	Ahy12g1168	1108	Gene3D	-	500	735	IPR027417	-
	Ahy12g1168	1108	ProSitePatterns	ABC transporters family signature.	643	657	IPR017871	GO:0005524
	Ahy12g1168	1108	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	502	743	IPR003439	GO:0005524
	Ahy12g1168	1108	MobiDBLite	consensus disorder prediction	432	455	-	-
	Ahy12g1168	1108	Pfam	ABC-2 type transporter	700	1108	IPR043926	GO:0140359
	Ahy12g1168	1108	Pfam	ABC transporter	521	671	IPR003439	GO:0005524
	Ahy12g1168	1108	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	33	1105	-	-
	Ahy12g1168	1108	MobiDBLite	consensus disorder prediction	325	354	-	-
	Ahy12g1168	1108	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 24	33	1105	-	-
	Ahy12g1168	1108	CDD	ABCG_EPDR	500	726	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy12g1168	Ahy-Chr12	31640500	31649493	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy12g1168	526	732	Calmodulin-binding Proteins	AT2G36910	28.319	2.34e-12	69.7