Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1166 ATGACAGTTATCAAGAGAGAAAGAGAAACAAACAATGGAAAAGAGAGCATAGATTATTTGGCAAATACCCTAATGTTGCTCTCAAGTGCCATAGAATTGAAGAGTAGTGAGAAATTCGAGTGCAAGACATGTGGCCGCAAGTTCGCATCTTTTCAAGCACTTGGTGGGCACAGAACCAGTCACAAGAGACAAAAGCATAATGGTGATCATGGTGATGAGCAACAACTCAAATCAGAGGCCAAGAAACCCAAGAAGATGCACGAGTGTTCAATCTGTGGAATGGGATTCTCTTTGGGGCAGCAATTAGGTGGCCACATGAGAAAGCACAGAGAGAATAATAATAAAGGGTTTTCTTCTAATCCTATAAACCATGCTGTTGTCAAAGTTCCGGTTTTGAAGAGATCAAATAGCAAGAGGGTTATGTGTATGGACTTGAACTTGACGCCATTGGAGAATGATCTCAAGTTGTTGTTTGGAAACAAGGCACCACGAGTTGATCTTTCTTTCTTGTGA 513 0.4113 MTVIKRERETNNGKESIDYLANTLMLLSSAIELKSSEKFECKTCGRKFASFQALGGHRTSHKRQKHNGDHGDEQQLKSEAKKPKKMHECSICGMGFSLGQQLGGHMRKHRENNNKGFSSNPINHAVVKVPVLKRSNSKRVMCMDLNLTPLENDLKLLFGNKAPRVDLSFL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1166 170 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 4 164 - -
Ahy12g1166 170 PANTHER ZINC FINGER PROTEIN ZAT5 4 164 - -
Ahy12g1166 170 MobiDBLite consensus disorder prediction 54 81 - -
Ahy12g1166 170 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Ahy12g1166 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Ahy12g1166 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Ahy12g1166 170 MobiDBLite consensus disorder prediction 65 81 - -
Ahy12g1166 170 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Ahy12g1166 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Ahy12g1166 170 Gene3D Classic Zinc Finger 36 109 - -
Ahy12g1166 170 SMART c2h2final6 39 61 IPR013087 -
Ahy12g1166 170 SMART c2h2final6 87 109 IPR013087 -
Ahy12g1166 170 Pfam C2H2-type zinc finger 87 111 - -
Ahy12g1166 170 Pfam C2H2-type zinc finger 39 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1166 Ahy-Chr12 31571669 31572379 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1166 4 170 C2H2 Transcription Factor Family AT2G37430 41.989 1.59e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy12g1166 zf-C2H2_6 5.20E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1166 - - gmx:100526874 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1166 12 31571669 31572379 Ahy2g1054 2 29704941 29705656 hybridization
Ahy16g1495 16 32782158 32782868 Ahy12g1166 12 31571669 31572379 PCT
Ahy6g1353 6 21192775 21193503 Ahy12g1166 12 31571669 31572379 PCT
Ahy12g1166 12 31571669 31572379 Ahy16g1495 16 32782158 32782868 PCT
Ahy12g1166 12 31571669 31572379 Ahy6g1353 6 21192775 21193503 PCT