Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1106 ATGTTTTCAACTGTTTTCTCTGTTATATACATATATGTAGCTTTCTTATTCTCATTTGTATTTGTCTCACTGCAGAAGGATGTTGATATTGAATTTTCGGAAGCGAAAAAACAAGCCCGTGGCTCGACATCTACAAAGAGATCTCGTGCAGCAGAGGTCCATAATCTTTCAGAAAGGAGGCGTCGAGATAGAATTAATGAAAGGATGAGAGCTTTGCAAGAACTTATACTTCGGTGCAACAAGTCTGACAAAGCATCCATGCTGGATGAAGCAATCGAATACTTGAAGTCACTAAAGTTACAAGTACAGATGATGTCCATGGGATACAGCATGCTACCGATGATGTTCTCCGGAATCCAGCAGTATATACACTCAATAGGAATGGGGATTGGAATGGGTATGGGCGTGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAACATGTTAGCTGGTTCTGCTTTGCCACCAGCAACTCCTTCAGGTGCTCCTCATTTGGGACCAAGATTCCCTTTGCCCCCTTTGCATATGCCCCATGTTGATGCATCAAGAATGCAAGTGCAAAACCTGCCAGATAATCATAATGTGCCTACCTCAATTAGTACATCGGATCCAGCAGCTCAATCATCAGCAATACCTTGGTCCACACCAGATAAATTTACATTTAATGCAGGCAATGAACCAATCCAACGCCACCAAACCAAGCACTAG 714 0.4272 MFSTVFSVIYIYVAFLFSFVFVSLQKDVDIEFSEAKKQARGSTSTKRSRAAEVHNLSERRRRDRINERMRALQELILRCNKSDKASMLDEAIEYLKSLKLQVQMMSMGYSMLPMMFSGIQQYIHSIGMGIGMGMGVEMGMNRPVMPFPNMLAGSALPPATPSGAPHLGPRFPLPPLHMPHVDASRMQVQNLPDNHNVPTSISTSDPAAQSSAIPWSTPDKFTFNAGNEPIQRHQTKH* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1106 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Ahy12g1106 237 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 214 - -
Ahy12g1106 237 SMART finulus 55 104 IPR011598 GO:0046983
Ahy12g1106 237 Pfam Helix-loop-helix DNA-binding domain 53 99 IPR011598 GO:0046983
Ahy12g1106 237 MobiDBLite consensus disorder prediction 190 230 - -
Ahy12g1106 237 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 26 214 IPR031066 -
Ahy12g1106 237 MobiDBLite consensus disorder prediction 190 237 - -
Ahy12g1106 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 127 IPR036638 GO:0046983
Ahy12g1106 237 Gene3D - 44 107 IPR036638 GO:0046983
Ahy12g1106 237 MobiDBLite consensus disorder prediction 39 60 - -
Ahy12g1106 237 CDD bHLH_AtPIF_like 49 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1106 Ahy-Chr12 27886864 27890396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1106 33 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 83.562 5.58e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy12g1106 HLH 9.80E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1106 - - aip:107627063 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1106 12 27886864 27890396 Ahy12g1106 12 27886864 27890396 ECH