Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1071 ATGAGAGTGACTGAATATACTTCTATGCTTTGTGTGGACCTTATAAAGAATGAGCAAGTGGTAGCTGTGATAGGACCAATCACAACAATGGAAGCCATGTTTGTGATCAACCTCGGAGATAAAGCGCACGTGCCCATTCTCACGTTCTCAGAAATGAGCCCTTCTCTCTCATCACTCCACACCCCATACTTGTTCCAAATTGCAAAGAAAGATTATTATTTCACTCAAGTCGAGGCCATAAGCGCCATTGTTCAAGCTTTTGGGTGGAAACAAGTGGTTCCAATATACGTGGACAACGGTTATGGCGAAGGACTCATTGCATCCCTAACCAATTCATTTCAGAAAGCATACATTCGTGTTCCTTATCTCAGCGCCATTGATTTCTCAGCCACAAATGATGCCATTGAGAGAGAGCTCTACAAGCTCATGACTATGCAAACTGGAGTCTTTGTTGTTCACATGACATCCCGTCTTGCCTCTCGTCTCTTCACCATTGCCAAAGACATTGGAATGATGGATGAAGGTTATGTTTGGATTGTGACTGCTGGAATCGCTAATCTCTTTAACTCATTGGACTCTTGGGTTATGAAATCCATGGAAGGTGTGCTGGGTGTTAGGCCTTATATTCCAAGAACAAAACAGCTTCTTGATTTTAGAGCTCGATGGAAAAGAGAGTTCTTAAGAGACAATCCAACACCTGTTGATGTTAATTTGGATGTTTTTGGAATATGGGCCTATGATGCTACTGCTGCATTAGCCATGGCAGCTGAGAAGCTTGACAACACTGTTTTCGGCTTCACTAATGTGAGCAACAACTCCAGCAACGTGACTGATCTTGAAAACTTTGGCGTTTCGCGAAACGGCGAGAAGCTGAGGGAAGCTTTATCAAATGTTAGATTCAAAGGTGTTGATGGTGAGTTCAAAGTAGTGGGTGGTGGCGGTGGGAAGTTAGAAGCATCACCATTTGAGATAGTTAATGTGATTGGTAATAGTGAGAGGAACATTGGATTTTGGACACCACAGAAGGGACTAATCAGAGACATGGATGCAAATAATTCAACTTCTAAGGAGAATCTAAGAACAATTCTATGGCCAGAGGACTCTTACTCTGTTCCAAAGGGATGGGAAATTCCTACAAATGGTAACAAGTTAAAGAGGAGTCCAGTGAAAGATAATGGCTTCTCTGAATTTGTGAAAGTAATCCATGATCCTATTACCAATTCTACAAAGGTCACCGGGTTCTGCATTGATGTGTTTAATGTTGTGGTAAAAGCGTTGCCTTATGCCCTTCCATTTGAATTCATTCCATTTGAAAATTCCAACAATGAGATGGCAGGAACATATGATGATTTGATCACCCAAGTTTATTTAAACAAGTTTGATGCTGTGGTGGACACAATGATTACGGGAAACAGGTCCAAATATGTCGATTTCACATTGCCGTACACAAAATCTGGTGTGACTATGGTTGTTCCAGTAAGAGACAATAGAAAGAAGAATGCATGGGCCTTCTTGAATCCATTGACATGGGACTTTTGGGTAACAATATTTTCCTTTATTTTAATAGGATTTGTTGTTTGGGTACTTGAACACCAAATCAATGAATGTTTTAGAGGGCCTATGCCTTATCAAATTGGCACTGGCCTATGGTTTTCCTTCTCAACCATGGTATTTTCTCATCAGCAATTATGGGTTTTTGTAGTTCAAATTCTGGTTCAAAGCTACACTGCAAGTCTTACCTCTCTCTTAACAGTTGAACGACTTCGCCCAGCATTTACAGATGTTCATCAACTCTTAAAGAATCAGTTGAATGTTGGTTATTTAGAAGCTTCTTTTGTTCATGAAATCTTGAAGGATTTGCGGTTCCATGAAAACCAGCTTAAGATATATAAATCTACAGAAGAATGCAATGATCTCTTCACAAAAGAAAGTGCTAATGGTGGTATCGATGCGGCGTTTGACGAAGTCCCTTATGTGATGCACCTTCTTGGAACTTATTGCTCCAAGTATGCGATGGTTGATCCAAGATTTAAAACTGGTGGCTTTGGCTTTGTGTTTTCAAAAGGGTCACTTCTAGGAGACATATCACGTGCAATCTTGAATGTGAGTGAAGGAGGCAAAATGAGAAGAATTGAGAATGCATGA 2145 0.4051 MRVTEYTSMLCVDLIKNEQVVAVIGPITTMEAMFVINLGDKAHVPILTFSEMSPSLSSLHTPYLFQIAKKDYYFTQVEAISAIVQAFGWKQVVPIYVDNGYGEGLIASLTNSFQKAYIRVPYLSAIDFSATNDAIERELYKLMTMQTGVFVVHMTSRLASRLFTIAKDIGMMDEGYVWIVTAGIANLFNSLDSWVMKSMEGVLGVRPYIPRTKQLLDFRARWKREFLRDNPTPVDVNLDVFGIWAYDATAALAMAAEKLDNTVFGFTNVSNNSSNVTDLENFGVSRNGEKLREALSNVRFKGVDGEFKVVGGGGGKLEASPFEIVNVIGNSERNIGFWTPQKGLIRDMDANNSTSKENLRTILWPEDSYSVPKGWEIPTNGNKLKRSPVKDNGFSEFVKVIHDPITNSTKVTGFCIDVFNVVVKALPYALPFEFIPFENSNNEMAGTYDDLITQVYLNKFDAVVDTMITGNRSKYVDFTLPYTKSGVTMVVPVRDNRKKNAWAFLNPLTWDFWVTIFSFILIGFVVWVLEHQINECFRGPMPYQIGTGLWFSFSTMVFSHQQLWVFVVQILVQSYTASLTSLLTVERLRPAFTDVHQLLKNQLNVGYLEASFVHEILKDLRFHENQLKIYKSTEECNDLFTKESANGGIDAAFDEVPYVMHLLGTYCSKYAMVDPRFKTGGFGFVFSKGSLLGDISRAILNVSEGGKMRRIENA* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1071 714 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 11 714 - -
Ahy12g1071 714 PANTHER GLUTAMATE RECEPTOR 2.9 11 714 - -
Ahy12g1071 714 Gene3D - 501 631 - -
Ahy12g1071 714 SUPERFAMILY Periplasmic binding protein-like II 361 713 - -
Ahy12g1071 714 Gene3D - 394 500 - -
Ahy12g1071 714 SUPERFAMILY Periplasmic binding protein-like I 9 376 IPR028082 -
Ahy12g1071 714 Pfam Receptor family ligand binding region 6 326 IPR001828 -
Ahy12g1071 714 Gene3D - 300 387 - -
Ahy12g1071 714 Pfam Bacterial extracellular solute-binding proteins, family 3 408 713 IPR001638 -
Ahy12g1071 714 Pfam Ligand-gated ion channel 510 644 IPR001320 GO:0015276|GO:0016020
Ahy12g1071 714 SMART GluR_14 383 714 IPR001320 GO:0015276|GO:0016020
Ahy12g1071 714 CDD PBP1_GABAb_receptor_plant 13 344 IPR044440 -
Ahy12g1071 714 Gene3D - 75 236 - -
Ahy12g1071 714 CDD GluR_Plant 388 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1071 Ahy-Chr12 25105036 25122673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1071 11 714 Ion Channels AT2G24720 47.448 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1071 K05387 - pop:18107187 792.341