Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1053 ATGGCTACACAGGGAAAAGTAATCACCTGCAAAGCTGCTGTGGCTTGGGAACCAAACAAGCCATTGAGTGTTGAGGATGTTGACGTGGCACCACCGCAGGCTGGAGAGGTCAGAATCAAAATTCTCTACTCTGCTCTCTGTCACACAGATGCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTATTCCCCTGTATACTTGGTCATGAGGCTGCTGGGATTGTGGAAAGTGTTGGCGAAGGTGTTACTTCAGTTCAGCCTGGTGATCATGTCATACCCTGCTACCAAGCTGAATGTGGAGACTGCAAGTTCTGCAAATCCGGCAAAACAAACCTCTGTGGCAAGGTCCGTTCGGCCACCGGAGTCGGCGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCCGTCAATGGAAAGCCTATCTATCATTTCATGGGAACTTCCACATTTAGTCAATACACTGTTGTTCATGATGTTAGTGTGGCTAAGATTGATCCCAATGCACCTTTGGATAAAGTTTGTCTTCTTGGATGTGGGGTTCCAACTGGCCTTGGAGCTGTTTGGAACACAGCAAAGGTGGAAGCAGGTTCAATTGTTGCTGTTTTTGGCCTTGGAACTGTTGGTCTTGCTGTTGCGGAGGGTGCAAAAGCTGCCGGTGCATCACGGATTATTGGCATAGATATCGATCGCAATAAGTTTGAAAGAGCAAAGAATTTTGGAGTCACAGAGTTTATCAATCCAAAGGAGCATGAAAAGCCAATTCAGCAGGTCATAGCTGATCTCACAGATGGTGGAGTTGATTACAGCTTTGAGTGCATTGGAAATGTCTCGGTGATGAGAGCTGCTTTGGAATGCTGCCATAAAGGCTGGGGTACATCAGTAATTGTAGGTGTTGCAGCATCAGGTCAAGAAATATCGACTCGGCCCTTCCAGTTGGTGACCGGGCGAGTCTGGAAAGGAACAGCTTTCGGAGGCTTCAAGAGCAGGTCACAAGTACCTTGGCTTGTTGACAAGTACATGAAGAAGGAAATCAAGGTTGATGAGTACATTACACACAGTTTGAACCTTCCTGAGATTAACAAAGCATTTGACCTTTTGCATGAAGGAGGGTGTCTCCGTTGTGTTCTTGCATTGCATGTATGA 1140 0.4684 MATQGKVITCKAAVAWEPNKPLSVEDVDVAPPQAGEVRIKILYSALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTSVQPGDHVIPCYQAECGDCKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPNAPLDKVCLLGCGVPTGLGAVWNTAKVEAGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDRNKFERAKNFGVTEFINPKEHEKPIQQVIADLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYMKKEIKVDEYITHSLNLPEINKAFDLLHEGGCLRCVLALHV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1053 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Ahy12g1053 379 SUPERFAMILY GroES-like 2 198 IPR011032 -
Ahy12g1053 379 Pfam Zinc-binding dehydrogenase 206 329 IPR013149 -
Ahy12g1053 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 376 IPR014183 GO:0006069|GO:0008270|GO:0051903
Ahy12g1053 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Ahy12g1053 379 Gene3D - 182 320 - -
Ahy12g1053 379 PANTHER ALCOHOL DEHYDROGENASE 3 376 - -
Ahy12g1053 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Ahy12g1053 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Ahy12g1053 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 376 - -
Ahy12g1053 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Ahy12g1053 379 Gene3D - 13 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1053 Ahy-Chr12 24383119 24387773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1053 10 331 Monolignol Biosynthesis Gene Families AT1G72680 25.994 1.27e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1053 K00121 - psom:113290229 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1053 12 24383119 24387773 Ahy12g1053 12 24383119 24387773 ECH
Ahy12g1053 12 24383119 24387773 Ahy2g0965 2 21923344 21928026 hybridization
Ahy16g1426 16 29194131 29197440 Ahy12g1053 12 24383119 24387773 PCT
Ahy6g0047 6 719068 722287 Ahy12g1053 12 24383119 24387773 PCT
Ahy12g1053 12 24383119 24387773 Ahy16g1426 16 29194131 29197440 PCT
Ahy12g1053 12 24383119 24387773 Ahy6g0047 6 719068 722287 PCT