Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1039 ATGGCGCTATGGATGGAAAAGGGTACAGAGCCACTCACAGAAGCCGAGAAGGCAGACCTTGAAGCCATTGCTGCCATCAAAGAATCCGCAGCCATTGAACTCAAGGAAAAGGGTAACGAGTATGTGAAGAAGGGTAAGAAGCATTACTCTGAAGCAATTGATTGCTACACAAGGGCAATTAATCAGAAAGCATTGAGTGATTCTGAGAGCTCTGTTCTTTTTGCGAACAGAGCGCATGTCAATTTGCTTCTTGGAAACCATAGGCGTGCCCTCTCTGATGCTCAACAAGCACTCAACTTGTCCCCCTCCAACATAAAGGCAATTTATAGGGCTGTCAAAGCATCTCTATCACTGAATTTATTGGCTGAAGCACAAGACTTTTGCCGAAAGGGTCTTCAGTTGGACCCCAATAACGAGGAACTTAAGAGGCTTGACCAACAGATTCATACGAAGATATCGGAGAAGGAGAAGCGTGAGGCTGAAGTCTCCAAAGCCATATCGGAGGCAGAAGAACTTGTGTCTGCAATAGAGAATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGAGAACTCACCGGGTTAAAGAAACCGGTGTTAGACAAAAATAATATCCTTCATTGGCCTGTCCTTCTTCTGTATGCAGAGGTTATGTCCAGTGATTTCATTGAGGATTTATGTGAGACTGACATGCTTTCAGTCCACCTTGATATGATGTTTTCAGCTGACCAACCACTCCCATGGGATGTTGAAAACAATTACAAACGTGATTTTGTTGAATTATACTATGAGGCTGGCTCTGGAGTTCGTCTATCAAAGGAGAAACTTCTTCATTGTTTATTAGAGGGAACTGCAGCTTCTCATGTCAGTGATGAAGAGAAAGATGCAGTTGAGGATTTTAAACACGGTGCAGGTTCCCGAAAATGGATCAAAGTAAATGAGAAGAAAATGCTCCAAGATATCCTCAAAGAGCCTAATTTCGTAATCCCAGAAATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGA 1074 0.4283 MALWMEKGTEPLTEAEKADLEAIAAIKESAAIELKEKGNEYVKKGKKHYSEAIDCYTRAINQKALSDSESSVLFANRAHVNLLLGNHRRALSDAQQALNLSPSNIKAIYRAVKASLSLNLLAEAQDFCRKGLQLDPNNEELKRLDQQIHTKISEKEKREAEVSKAISEAEELVSAIENRGLKIGKAMYRELTGLKKPVLDKNNILHWPVLLLYAEVMSSDFIEDLCETDMLSVHLDMMFSADQPLPWDVENNYKRDFVELYYEAGSGVRLSKEKLLHCLLEGTAASHVSDEEKDAVEDFKHGAGSRKWIKVNEKKMLQDILKEPNFVIPEIPVFYVVSKQSSFYSKFKSGKWAPPSI* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1039 357 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Ahy12g1039 357 SUPERFAMILY TPR-like 22 162 IPR011990 GO:0005515
Ahy12g1039 357 Coils Coil 152 172 - -
Ahy12g1039 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Ahy12g1039 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 353 - -
Ahy12g1039 357 SMART tpr_5 71 104 IPR019734 GO:0005515
Ahy12g1039 357 SMART tpr_5 105 138 IPR019734 GO:0005515
Ahy12g1039 357 SMART tpr_5 31 66 IPR019734 GO:0005515
Ahy12g1039 357 Gene3D Tetratricopeptide repeat domain 24 181 IPR011990 GO:0005515
Ahy12g1039 357 Pfam Cns1/TTC4 Wheel domain 200 267 IPR044059 GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1039 Ahy-Chr12 23932299 23936809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1039 30 160 Calmodulin-binding Proteins AT3G25230 32.394 4.03e-09 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g1039 12 23932299 23936809 Ahy12g1039 12 23932299 23936809 ECH
Ahy12g1039 12 23932299 23936809 Ahy2g0957 2 21587995 21592629 hybridization