Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1001 ATGGTCGATGCTATACTCGTGGACTATTTGGACACATTGCCAAGGATCGCCATCGTGGAAAAAACCAGGATGCGAGTCAGAACCAACATGGTCATTTCTAACAACAACATCACCAACAAAAGAGTTGCAGGGTCTAAATGTTCAGCAGAATCAAATGTTGGTGGAAATGGAAATTTGATAGGCGATGAACCAGATTATGAAGAAGATAATATTATAACTAGGTTGAAACTTCGAGCATTGACGATGGCATCGGTTGCTAATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCGAAAATTACTTACTTGACAGAGAGCGAGTCTAAAAACCTCGAAGATGGTTATAAATGGCGCAAGTACGACAAAAAATCATTCAAAAAGAGCCCTTTCCTAAGAAGCTACTATCGTTGCACTGCAATTGGTTGTAATGCAAAGAAGAGAATGGAGCGGTACGTGGATGATCCCACCCATGTCCTAACCACCTATGTGGGTTTGCACGCTCACGATTTGCCACCAATCCTCACCCCTCTATCAAGATCTTTCAACCTCTACAATAGCTCCACCGTTAGCCCCAAATTTAGCAGAGGAAGCGGTGTACAAAAACTTGTACTTTCAGATGCAAGTGCAGGTGCAAGGAAAAGAAAGCATGCCAATAACATTATTACTAGTGTTAATGTTAGAACTGACAGTGATAGTTGTGTTAATGACATTGGCTCAAATGAGGATATTGGTACCGGACTGCTTGAGGATATTGTTAATTTTCATGGCATCGAATTAAAGCATCCTCTTCCTTCTCTGTCTCCATACGTAGTTATTCTAGAATCTTCTGAAGTAGTTGCACAGTCACAAAATCCAGTCCTTTCCACAATCCCATCCAATCCTGAGGTGACCGTTTCTAACAATAACATCACCAACAAGAGAGTTGGAGGGCTTAAACATTCAGCAGAATCAATTGTTAGTGGAAATGGAAATCTGAGAGGCGATGAAACAGATGATGAAGAAGATAATATTATAACTAGGTTGAAACTTCGAGCATCGACGATAGCATCGGTTGCTGATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCAAAAATTACTTACTTGACAGAGAGCGAGTCTGAAAACCTCGAAGATGGTTATAAATGGCACAATGCAATTGGTTGCAATGCGAAGAAGAGAGTGGAGCGGTACATGGATGATCCCACCCATGTACTAACCACCTATGTGGGTTTGCATGCTCACAATTTGCCACCAATCTTCCTTCCTCCATCAAGATCTTTCAACTTCTACAATAACTCCACCGTTAGTCCCAACCTTTGTAAAGGAAGCAGTGTAAAAAAATCTGTACTTTCAGATGCAGGTGCAAGTGCAAGGGAAAGAAAGCATGCCAATAACACTATCACTAGTGTTAATGTTAGAACTGACAGTGATAGTTGTGTTAATGACGTTGGCTCGATTGAGGATATTGGTACCGGACTGCTTGAGGATATTGTTAATTTGTCATCAATATCACCTCATTATCAACATTATCAACCAACATCTCTATAG 1569 0.4009 MVDAILVDYLDTLPRIAIVEKTRMRVRTNMVISNNNITNKRVAGSKCSAESNVGGNGNLIGDEPDYEEDNIITRLKLRALTMASVANTMSMNNKRNKNNLSKITYLTESESKNLEDGYKWRKYDKKSFKKSPFLRSYYRCTAIGCNAKKRMERYVDDPTHVLTTYVGLHAHDLPPILTPLSRSFNLYNSSTVSPKFSRGSGVQKLVLSDASAGARKRKHANNIITSVNVRTDSDSCVNDIGSNEDIGTGLLEDIVNFHGIELKHPLPSLSPYVVILESSEVVAQSQNPVLSTIPSNPEVTVSNNNITNKRVGGLKHSAESIVSGNGNLRGDETDDEEDNIITRLKLRASTIASVADTMSMNNKRNKNNLSKITYLTESESENLEDGYKWHNAIGCNAKKRVERYMDDPTHVLTTYVGLHAHNLPPIFLPPSRSFNFYNNSTVSPNLCKGSSVKKSVLSDAGASARERKHANNTITSVNVRTDSDSCVNDVGSIEDIGTGLLEDIVNLSSISPHYQHYQPTSL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1001 522 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 87 256 - -
Ahy12g1001 522 PANTHER WRKY TRANSCRIPTION FACTOR 28-RELATED 395 507 - -
Ahy12g1001 522 SMART WRKY_cls 383 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 SMART WRKY_cls 114 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 SUPERFAMILY WRKY DNA-binding domain 109 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 SUPERFAMILY WRKY DNA-binding domain 378 424 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 Gene3D WRKY domain 390 425 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 Gene3D WRKY domain 99 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 ProSiteProfiles WRKY domain profile. 387 424 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 256 IPR044810 GO:0003700
Ahy12g1001 522 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 395 507 IPR044810 GO:0003700
Ahy12g1001 522 Pfam WRKY DNA -binding domain 387 421 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 Pfam WRKY DNA -binding domain 115 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1001 522 ProSiteProfiles WRKY domain profile. 109 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1001 Ahy-Chr12 22120114 22130903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1001 360 505 WRKY Transcription Factor Family AT3G62340 28.249 1.02e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy12g1001 WRKY 2.10E-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1001 - - aip:107626999 1033.86