Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g1000 ATGGAAGAACATAATACATCATTACTTTCTCCACTATCACTACCGCCACCCCCATCTTTATTGTCTATACCAACCACCATCACCCAAGATTTCAGCTTTTTCAACGATACCTTCTTTGAAAAGTCACTTTCTGGCTTGGTAAACGTTGGAGACTTTGGTCCTTCCTTATATGAGTGGTTAGACATAGCTGAAGAAGATGCTGCACCAACTGAGACGCCAATAAAGCATCCTATTCCTTCTTTGTCTCCATACGTAGTTATTCTAGAATTTACTGAAGTAGTTGCAGAGTCACAAAATCCAATCCTTTCCATAATCCCATCCAATCCTGAGGTGGTCGTTTCTAACAATAACATCACCAACAACAGAGTTGGAGGGGCTAAACGTTTAGAAAAATCAATTGTTGGTGGAAATGGAAATCTGAGAGGCGATGAACCAGATGATGAAGAAGATAATATTATAACTAGGTTGAAACTTCGAGCATCGACGATGGCATCGGTTGCTGATACCATGAGCATGAACAACAAAAGGAATAAAAATAATCTTTCAAAAATTACTTACTTGACAAAGAGCGAGTCTGAAAACCTCGAAGATGGTTATAAATGGCGCAAGTACGGCAAAAAATCACTCAAAAAGAGCCCTTTCCCAAGGAGCTACTATCGTTGCACTGCAATTGGTTGCAATGCGAAGAAGAGAGTGGAGCGGTACGTGGATGATCCCACCCATGTACTAACCACCTATGTGGGTTTGCACGCTCATGATTTGCCACCAATCCTCCCTCCTCCATCAAGATCTTTCAACCTCTACAATAACTCCACCGTTAGCCCTGATAAAGGAAGCGATGTACAAAAACCTGTACTTTCAGATGCAAGTGCCGGTGCAAGGGAAAGAAAGCATGGCAATAACACTATTACTAATGTTAATGTTAAAACTGACAGTGATAGTTGTGTTAATGACATTGGCACGATTGAGGATACTGGTACCGGATTGCTTGAGGATATTGTTAATTTGTCATCAATAGCACCTCATCATCAACATCATCAACCAACATCTCTATAG 1056 0.4081 MEEHNTSLLSPLSLPPPPSLLSIPTTITQDFSFFNDTFFEKSLSGLVNVGDFGPSLYEWLDIAEEDAAPTETPIKHPIPSLSPYVVILEFTEVVAESQNPILSIIPSNPEVVVSNNNITNNRVGGAKRLEKSIVGGNGNLRGDEPDDEEDNIITRLKLRASTMASVADTMSMNNKRNKNNLSKITYLTKSESENLEDGYKWRKYGKKSLKKSPFPRSYYRCTAIGCNAKKRVERYVDDPTHVLTTYVGLHAHDLPPILPPPSRSFNLYNNSTVSPDKGSDVQKPVLSDASAGARERKHGNNTITNVNVKTDSDSCVNDIGTIEDTGTGLLEDIVNLSSIAPHHQHHQPTSL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g1000 351 SUPERFAMILY WRKY DNA-binding domain 189 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1000 351 Gene3D WRKY domain 180 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ahy12g1000 351 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1000 351 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 140 275 - -
Ahy12g1000 351 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ahy12g1000 351 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 140 275 IPR044810 GO:0003700
Ahy12g1000 351 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g1000 Ahy-Chr12 22050353 22051864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g1000 173 278 WRKY Transcription Factor Family AT2G47260 48.113 5.07e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ahy12g1000 WRKY 5.50E-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g1000 - - aip:107636875 472.626