Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0936 ATGGGTCTTAGAGATATTGGTGCTTCATTGCCACCTGGGTTTCGGTTCTATCCAAGTGATGAAGAATTAGTTCTTCACTATCTTTACAAGAAGATCACAAATGAGGAAGTTCTCAAGGGTACTTTGATGGAAATTGATTTGCACACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAATGGTACTTCTTCAGCTTCCGTGACCGCAAATACGCCACCGGGTTTCGCACCAATCGCGCCACGACATCTGGCTATTGGAAAGCGACCGGCAAGGATCGTACGGTTCTCGATCCCCTCACCCGCGAGGTCGTAGGGATGCGGAAGACTTTGGTGTTCTACAAGAATAGAGCCCCAAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCACCTAAGGAGGATTGGGTTTTGTGTAGAGTGTTTCACAAGGGCAAAACAGACAATAGTGCCAAACTAAGCCCACAATTCATGTATGAGGCCACACCTTCATCCCTAACTTTGGCTTCATCATCATCATCCCCACCAACAAACCAAACAAATTGCAACAATTTGCATGTTATTGGGTATAACCAACTTCCCAATTTCTCATCATCATCATCACCAATGGCAATCCACCATAATCATCATCATCATCATCATCATCAAAACCAAAACGGTTCTTCCTCTTTGATGAATCTCCTTCAATTTTCCACTAAGGAAAATAGTACCATTACTCAACTAAGTCCCAAAGGTGGTGGTGGCGGCGGCGGCGGCGACGACGGCGGCTATGGGTTCATGTGGGACATGGATCTTGAGGAAAATAGCTTCCATGATGGTGGGGTTATTGCATCAAACTTGAACGACATGAGATTTGAGGTTGATAATAACACTATGGTTATGTTGTAG 924 0.4535 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPLTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTDNSAKLSPQFMYEATPSSLTLASSSSSPPTNQTNCNNLHVIGYNQLPNFSSSSSPMAIHHNHHHHHHHQNQNGSSSLMNLLQFSTKENSTITQLSPKGGGGGGGGDDGGYGFMWDMDLEENSFHDGGVIASNLNDMRFEVDNNTMVML* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0936 307 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Ahy12g0936 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 303 - -
Ahy12g0936 307 MobiDBLite consensus disorder prediction 211 233 - -
Ahy12g0936 307 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Ahy12g0936 307 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Ahy12g0936 307 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 303 - -
Ahy12g0936 307 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0936 Ahy-Chr12 19289911 19296469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0936 6 156 NAC Transcription Factor Family AT1G56010 58.491 1.04e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ahy12g0936 NAM 1.20E-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0936 - - aip:107625035 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0936 12 19289911 19296469 Ahy12g0936 12 19289911 19296469 ECH
Ahy12g0936 12 19289911 19296469 Ahy2g0800 2 14868434 14874831 hybridization
Ahy16g1368 16 27133146 27135458 Ahy12g0936 12 19289911 19296469 PCT
Ahy6g0088 6 1217789 1221816 Ahy12g0936 12 19289911 19296469 PCT
Ahy12g0936 12 19289911 19296469 Ahy16g1368 16 27133146 27135458 PCT
Ahy12g0936 12 19289911 19296469 Ahy6g0088 6 1217789 1221816 PCT