Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0931 ATGCATATAGGTCAAACAGATACAACTTCAGTGAAATGTCTAATCAACAGCATATCTCGATTCCTTCATCTGGTCTCTTGCCAAATCGTGAAGCCTGCGCCTTTTCAGAAGATCTGTCATAATATGGTCGGGGTGTTAAAGCGACTGAAGCCAGTGCTTGATGATGTAATGGACTACAAACTCCCATTTCACCAAAATATGTCTAAAGAGTGTGAAGAATTGGATGTGCGGATCAATGAAGCTAGAGACTTCATCGAAAAATGGGGTCCAAAGATGAGCAAGATTCTTAGTGTTATTCAAAGCAGCACATTGTTGATTAAGTTGCAGAGCACATCACTTGACATATGTCACATGATAGTTAGATCCCTACAGTCACCTCCATCTGCTTCGGTTTTGGCTAATCTTCAGAACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTTTATATAGAAGAAGCACTAAGAAACCAGAGAGATAATGTTCAACCTTCCAACGAGCTTCTGAAGGAAATTGCCGAGTTACTAAAATTGACATCAAACGAGGAGCTCTTGAAAGAAAGTATCGTCGTGGAAAAGGAAAGGTTGAATGCTGAAGTCAATAAAATGAAAGGGGACTTGGATGAAATTAATGAAATTGTGAATCTTGTCCGCAATTTACGCGATTATGTAATGAGAACTGAGTCCCTTGAAGTCAAAACTGGTCTCTCAATCCCTCCATACTTCCGCTGCCCTTTATCATTGGAACTCATGATGGATCCTGTTATTGTGGCTTCGGGTCAAACATATGACAGGCAATCAATCCAAAAGTGGCTAGATAACGGGCTAAATGTTTGTCCCAAGACTCGTCAGAAGCTCAATCATATGAATCTTACTGCCAATTATACTGTCAAAGCTATGATTGCAAATTGGTGTCAGGAAAACAGTGTCAAGCTTTGTAGTAACTCGCTGCTCGATAAATCCTCTTGTATCACAACCCCTGCAGATCATTCATTGCCTCATGATTTAGCTAATAAATGTGGTTTCAAGTCTATGAATATTGATTCCATCTCAAGGTCATCTCTTCAAAATGGAAATGGAAATGAGAAACCAAATGGTGATAATTTTGTCAGATCAAGTGAAGAGTATAATGGATGCCGGAGCGGAACAGTGGAAAGATGTGATCAGCAATCATCCGATGTTCACAGCAGAAGTGAATCATCATTTTCAAGTTCAATATCTAGTACTGATTGCATACTTCCAGTTTCAGGACAGGCGTCCGGAATATCCGATAAGCCGCAAAATGTTGACAGTGTTGTTGGGAACAAACAAAGTCCTGCATCGAGAATCCAAGGGACGAGAAATGGTAATATTGTTATGAACAATAATAACATTAATACTAGTGCTAAGCAAAATGATTCAAGAGTTGATTCACATCCTATATTGAACTCGGGGGCCGGTGAAGTGGCCACTTCATCTCATGTTAATAAGTTGATCGAAGAACTTCGCAGCCAATCAGTTGAAGTGCAAACCATGGCTGCGGAAGAATTGAGGCTTCTTACAAAGAATGACATTGAAAACCGAATTATTGTGGGGCGGTGTGGGGCTGTTGAGCCTTTACTTTCGCTTCTGTATTCGGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTGTTAAATTTGTCAATCAATGAAGATAACAAGACTATGATTATGGAAGCTGGAGCCATAGAACCTCTTATCCATGTTTTGAAGACAGGAAATGATGGTGCCAAGGCAAATTCTGCGGCGGCACTATTCAGCCTCTCTGTAATAGAAAACAACAAAGAAAAAATCGGCCGATCCGGCGCAGTTAAAGCCTTGGTGGATCTTCTTGCCTGGGGAACTCTTAGAGGGAAAAAGGATGCTGCTACTGCGTTATTTAACTTGTCAATATTTCATGATAACAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCGGATGATGGAGTCTGCCGATGGAATGGTTGACAAGGCTGTTGCACTTCTGTCAAACCTGTCAACAATTCCAGAGGGCCGGATAGAAATCGCAAGGGAAGGAGGCATCCCCTTATTAGTTGAAATTGTTGAAACAGGTTCACATAGGGGAAAGGAGAATGCTGCTTCTGTTCTGTTACAGTTATGCCTTCATAGTACCAAGTTTTGTATTCTTGTTTTGCAAGAAGGAGCTGTACCTTCCCTAGTTGCATTATCTCAATCCGGTACGCCGAGAGCCAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGCAATCAGCGCGAAGGAGCTGCCGCGAAAGGAAAATCGTGA 2331 0.4148 MHIGQTDTTSVKCLINSISRFLHLVSCQIVKPAPFQKICHNMVGVLKRLKPVLDDVMDYKLPFHQNMSKECEELDVRINEARDFIEKWGPKMSKILSVIQSSTLLIKLQSTSLDICHMIVRSLQSPPSASVLANLQNYIQELQCLKKETAMVYIEEALRNQRDNVQPSNELLKEIAELLKLTSNEELLKESIVVEKERLNAEVNKMKGDLDEINEIVNLVRNLRDYVMRTESLEVKTGLSIPPYFRCPLSLELMMDPVIVASGQTYDRQSIQKWLDNGLNVCPKTRQKLNHMNLTANYTVKAMIANWCQENSVKLCSNSLLDKSSCITTPADHSLPHDLANKCGFKSMNIDSISRSSLQNGNGNEKPNGDNFVRSSEEYNGCRSGTVERCDQQSSDVHSRSESSFSSSISSTDCILPVSGQASGISDKPQNVDSVVGNKQSPASRIQGTRNGNIVMNNNNINTSAKQNDSRVDSHPILNSGAGEVATSSHVNKLIEELRSQSVEVQTMAAEELRLLTKNDIENRIIVGRCGAVEPLLSLLYSDMKITQEHAVTALLNLSINEDNKTMIMEAGAIEPLIHVLKTGNDGAKANSAAALFSLSVIENNKEKIGRSGAVKALVDLLAWGTLRGKKDAATALFNLSIFHDNKARIVQAGAVKFLVRMMESADGMVDKAVALLSNLSTIPEGRIEIAREGGIPLLVEIVETGSHRGKENAASVLLQLCLHSTKFCILVLQEGAVPSLVALSQSGTPRAKEKAQQLLSHFRNQREGAAAKGKS* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0931 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 613 655 IPR000225 GO:0005515
Ahy12g0931 776 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Ahy12g0931 776 SMART arm_5 683 723 IPR000225 GO:0005515
Ahy12g0931 776 SMART arm_5 602 642 IPR000225 GO:0005515
Ahy12g0931 776 SMART arm_5 561 601 IPR000225 GO:0005515
Ahy12g0931 776 SMART arm_5 643 682 IPR000225 GO:0005515
Ahy12g0931 776 SMART arm_5 519 560 IPR000225 GO:0005515
Ahy12g0931 776 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Ahy12g0931 776 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Ahy12g0931 776 Gene3D - 479 627 IPR011989 -
Ahy12g0931 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 654 695 IPR000225 GO:0005515
Ahy12g0931 776 Coils Coil 196 216 - -
Ahy12g0931 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Ahy12g0931 776 SUPERFAMILY ARM repeat 489 763 IPR016024 -
Ahy12g0931 776 Coils Coil 128 148 - -
Ahy12g0931 776 Pfam Armadillo/beta-catenin-like repeat 561 600 IPR000225 GO:0005515
Ahy12g0931 776 Pfam Armadillo/beta-catenin-like repeat 522 559 IPR000225 GO:0005515
Ahy12g0931 776 PANTHER U BOX DOMAIN-CONTAINING 11 771 - -
Ahy12g0931 776 MobiDBLite consensus disorder prediction 356 458 - -
Ahy12g0931 776 SUPERFAMILY RING/U-box 239 316 - -
Ahy12g0931 776 Gene3D - 628 774 IPR011989 -
Ahy12g0931 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Ahy12g0931 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 572 614 IPR000225 GO:0005515
Ahy12g0931 776 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 771 - -
Ahy12g0931 776 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0931 Ahy-Chr12 18918357 18923149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0931 7 774 U-box Gene Family AT5G67340 38.660 1.29e-167 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0931 - - gmx:100800949 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0931 12 18918357 18923149 Ahy12g0931 12 18918357 18923149 ECH
Ahy12g0931 12 18918357 18923149 Ahy2g0796 2 14636839 14641361 hybridization