Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0930 ATGGAGAATGGTAGTGAAATGATAAAAAAAACTAAAGGGAGACAAAAGATAGAGATAAAGAGGATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGACGGCTTGCTGAAAAAGGCAAATGAATTAAAATCTTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCCAGTGGGAAAGCCTATTACTATGGCGATTCTTCGTTAAAGACAATGAACATGGCTCTCTCAAACGAACAACAACCTCAAGGTAGTAATCAGTTCCTTGGTTACATCATGGAGGGAATGTCTAGGATGGACATGCAAAATCTTATTAAAAAGAACGATTCACTTGTGGATCGATTAAATGCTGAGAAAGAACGAGCCAAAACTTTTTCTAGAATTTTAAAGACAATTAAAAATGACAACATCACCAATTGGTGGGATATGATTGGTCAAAGTTGTGAAAAAGATAAAGAGATAGAAGAAATTCTTGTAGTTCTTCAGCAGACTTTAAAAAATCAAATTTCACTCAAAATTGTTGCAAATCAGGTTGCAGTTACGACTGTAGCTGAGAGTGTGGCATCTATATTTTATGACGGTGATCAAACCATGGATCAAGTTAATCCTGAAGTTATTGGATCATACCCTACTCATGGAAGTATGAGTACTTTTTCCAACATAGCATTTGCTACTGGTGTCAACCCTTTTGACGCTATGAGAGAATTGGATGACCAAAGTACCCCTTTGGTATCCATCATACCAACACCAACAAGGATATAA 774 0.354 MENGSEMIKKTKGRQKIEIKRIENKKNCQIAFTKRKDGLLKKANELKSLCDAGVDLIIYSSSGKAYYYGDSSLKTMNMALSNEQQPQGSNQFLGYIMEGMSRMDMQNLIKKNDSLVDRLNAEKERAKTFSRILKTIKNDNITNWWDMIGQSCEKDKEIEEILVVLQQTLKNQISLKIVANQVAVTTVAESVASIFYDGDQTMDQVNPEVIGSYPTHGSMSTFSNIAFATGVNPFDAMRELDDQSTPLVSIIPTPTRI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0930 257 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Ahy12g0930 257 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Ahy12g0930 257 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Ahy12g0930 257 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Ahy12g0930 257 SUPERFAMILY SRF-like 13 77 IPR036879 GO:0003677|GO:0046983
Ahy12g0930 257 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Ahy12g0930 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 122 - -
Ahy12g0930 257 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Ahy12g0930 257 Coils Coil 105 125 - -
Ahy12g0930 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0930 Ahy-Chr12 18814502 18815905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0930 7 146 Type I MADS-box Gene Family AT4G36590 33.333 1.29e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy12g0930 SRF-TF 1.90E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0930 - - ahf:112762769 397.897