Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0925 ATGCCGTCTCTCCCGTCCCCGGCGGGGAGAATCCACCGCCTGGAAATGGAGAATTTCAAGTCCTACAAGGGCCACCAAGTAATCGGCCCCTTCTTCGACTTCACCGCCATCATCGGTCCCAACGGCGCCGGAAAATCGAACCTCATGGACGCAATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAACTCCGTGGTGCGCAGCTGAGGGACCTCATCTACGCCTCCGACGACAAGGAGAAGGAGCAGAAGGGACGCAGGGCATTCGTTCGGCTCGTCTACCAGCTCAACAACAATAATGGTAGTAACAGTTCGGACACCGAGATCACGTTCACTCGAGCCATCACCAGCGCCGGCGCCAGCGAGTACCGAATCGACGGTAACGTTGTCACTTGGGATGTTTACAATGCCAAGCTCAAGTCCCTCGGGATACTTGTCAAGGCTCGCAATTTTCTCGTCTTTCAGGGTGATGTAGAATCCATTGCATCAAAAAACCCAAAGGAACTTACTGCCCTTCTCGAGCAAATATCTGGCTCTGATGAGCTCAAGAGGGACTACGAGCAATTTGAAGAAGAAAAGGGTGAAGCTGAAGAAAAATCAGCACTTGTCTATCAAAAGAAAAAGACAGTGGTGATGGAGAGAAAACAGAAGAAAGAACAAAAAGAAGAGGCAGAGAAACATCTCCGACTGCAAGAACAACTGAAATCTATAAAGAAAGAACATTTCCTGTGGCAGTTGTTCAATATAGAAAAGGATGTTGCTAAAACAAACGAGGAGCTTGACGATGATGAAAAACGCCGTAAAGAAGTTATGGAAGAACTAGAAAATTTTGAACGTGAGGCTAGTAAAAAGAAAAAGGAGCAAGCCAAATATCTGAAAGAGATTGCATTGCGTGAAAAAAAAATTACGGAGAAAAGTAGCAGACTTGACAAGAGTCAACCTGAGCTCCTCAAGCTGCGGGAGGAAATTAATCGTATAAATTCAAAAATTAAGAAAAGCAATAAGGAGCTTGAAAAGAAAAGAGCAGAACGGAGGAGACATGCTAATGATATAGAAGAGCTACAGAAGGGGATACAGGATCTTACAGCAAAAATGGCAGCCCTACAAGAAAGGAGTCGAGATGTTCGTAATCAGCTACAGTTAGACGGTGATGACTTGGAAAAATATTTTCAAATCAAGGAAGAAATTGGAATGAAAACTGCAGAGCTAAGAGAGAAGAAAGAGCTTCTAGATAGGCAGCAGCATGCTGATAGTGAAGCTAAAAAAAATTTGGAAGAAAATCTTCAACAGTTGGAAAACAGGGTGTCTGAGTTGGATTTGCAAGAAACACAGATGAAGACAAGGCTTAAAAAAATTCTTGGTGGTTCTGAAGGAAACAAGAACGAGCTTGAGAAACTGAAAAAGGAACTGCGTGTGATGGAGGAGAAACATCGTGATTCTAGGACTAAACATAAAAGCTTGGAGCTAAAAATTAGTGAAATAGAAAATCAGCTACGTGAATTGAAGGCTGATAGATATGAAAATGAAAGAGATGCTAGGCTGTCTCAGGCTGTGGAGGCTCTGAAACGCCTATTTCAAGGGGTCCATGGACGCATGACTGATCTTTGCAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAAGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTAAAAGATCAAAGGCTTCCTCCTCAGACATTCATTCCTCTGCAATCAGTTCGAGTGAAGCCAATCATGGAAAGATTGCGCACATTAGGGGGTACAGCGAAACTGGTTTTTGATGTGATTCAGTTTGATCCTTCCTTGGAGAAGGCAATTCTCTTTGCTGTGGGAAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTAGGCTGGAGTGGTGAGAGGTTTAAAGTTGTGACTGTGGACGGAATTCTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAACAAAAAGAAAGAGCAGTATGAATCAGATTTGGAAAAACTAGGATCAATAAGAGATATGCACCTCAAAGAGTCTGAAGCTGCTGGCAAAATTAGTGGACTCGAGAAGAAAATCCACTACGCTGATATTGAGGAGAAAAGCATCAAAGACAAACTTAGAAATTTGAGCCACGAAAAAAAGAACATCAAAGAAGAAATTGGTCGTATGAGTCCGGAACTCCAGAAGTTAAGAGATGCTGTTGATAAGAGGAAATCAGAAATAAGTGAGCTCGAGAAGGGCATAAATGAAAAAACAGATGAGGCTTACAAAAAGTTTAGCAAGTCTGTTGGGGTTGCAAATATCCGTGAGTATGAAGAAAACCGACTCAAAGATGCTCAGAGTGTTGCAGAAGAGAGGCTAGAACTGAGTAGCCAAATTTCAAAATTAAAATATCAATTGGAATATGAGCAAAATAGGGACATGAGTTCAAGAATTCAAGAGCTAGAATCATCCCTGGATACTTTACAGAATAATTTAAAACGGGCACAGAACAAAGAAGCTGAAACAAAGTTGGCTACCGAGAATGCTACCGAAGAGATTGATCAGCTTAAGCAAGAAATAAAAGAGTGGAAATCAAAGTCGGAAGATTGTGAGAAAGAAATCCAAGAATGGAAAAAGCAGGCTTCGTCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACACCAAGGAAGCACATATTGAGCAGATGATTGTACAAAAGCAGGAAATATTAGATAAGTGTGACTTTGAACAGATTAGCCTTCCAACCATATCTGATCCAATGGATACTGGCACCTCAACCCCAAGTCCAGTTTTTGATTTTGATCAGCTAAGCAGGGCATTGAAAGATAAGCACTCTGACAGGGATAAAATTGAGGTGGAATTTAAACAAAAAATGGATTCCTTGGTATCTGAAATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTTCTTGAAAAGGAAAAAGCTGTAACTGAAGAGTTTGAATTGGTGAGGAAAGAAGAGAAGGAGAAAGCTGATAGATTCAATTCAGTTAAGCAAAGGAGGTATGAATTGTTCATGGATGCTTTCAACCATATATCTGGCAATATAGATAAAATTTACAAACAACTCACAAAGAGTAGCACACATCCACTGGGTGGAACAGCATATTTAAACTTGGAAAATGAAGATGATCCTTTCCTACACGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAGAAAACTGTTGCTGCTCTTGCTTTGTTATTTTCCATCCACAGCTACAAGCCTTCACCATTTTTCATATTGGATGAAGTCGATGCTGCATTGGATAACTTGAATGTCGCTAAGGTTGCTGGATTTATCCGTGCGAAGTCTTGTGAAGGAGCAAGGGTTAGCCAGGATGCTGATGGGGGCAACGGTTTCCAGAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCCTTAGTTGGTGTTTACAGGGACTCTGAAAGAGGTTGTTCGAGGACTCTCACGTTTGATCTGACTAAATACCGTGAGTCATAG 3675 0.4199 MPSLPSPAGRIHRLEMENFKSYKGHQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLRDLIYASDDKEKEQKGRRAFVRLVYQLNNNNGSNSSDTEITFTRAITSAGASEYRIDGNVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKGEAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSIKKEHFLWQLFNIEKDVAKTNEELDDDEKRRKEVMEELENFEREASKKKKEQAKYLKEIALREKKITEKSSRLDKSQPELLKLREEINRINSKIKKSNKELEKKRAERRRHANDIEELQKGIQDLTAKMAALQERSRDVRNQLQLDGDDLEKYFQIKEEIGMKTAELREKKELLDRQQHADSEAKKNLEENLQQLENRVSELDLQETQMKTRLKKILGGSEGNKNELEKLKKELRVMEEKHRDSRTKHKSLELKISEIENQLRELKADRYENERDARLSQAVEALKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGGTAKLVFDVIQFDPSLEKAILFAVGNTLVCDDLEEAKVLGWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESDLEKLGSIRDMHLKESEAAGKISGLEKKIHYADIEEKSIKDKLRNLSHEKKNIKEEIGRMSPELQKLRDAVDKRKSEISELEKGINEKTDEAYKKFSKSVGVANIREYEENRLKDAQSVAEERLELSSQISKLKYQLEYEQNRDMSSRIQELESSLDTLQNNLKRAQNKEAETKLATENATEEIDQLKQEIKEWKSKSEDCEKEIQEWKKQASSATTNISKLNRLINTKEAHIEQMIVQKQEILDKCDFEQISLPTISDPMDTGTSTPSPVFDFDQLSRALKDKHSDRDKIEVEFKQKMDSLVSEIERTAPNLKALDQYEALLEKEKAVTEEFELVRKEEKEKADRFNSVKQRRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRAKSCEGARVSQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0925 1224 Coils Coil 413 447 - -
Ahy12g0925 1224 Coils Coil 178 198 - -
Ahy12g0925 1224 Coils Coil 315 377 - -
Ahy12g0925 1224 Coils Coil 455 510 - -
Ahy12g0925 1224 Pfam RecF/RecN/SMC N terminal domain 11 1205 IPR003395 -
Ahy12g0925 1224 Gene3D - 805 945 - -
Ahy12g0925 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 287 IPR027417 -
Ahy12g0925 1224 Gene3D - 594 667 - -
Ahy12g0925 1224 Pfam SMC proteins Flexible Hinge Domain 525 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ahy12g0925 1224 Coils Coil 245 293 - -
Ahy12g0925 1224 CDD ABC_SMC1_euk 11 165 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Ahy12g0925 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1207 IPR027417 -
Ahy12g0925 1224 CDD ABC_SMC1_euk 1103 1218 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Ahy12g0925 1224 Gene3D - 484 593 - -
Ahy12g0925 1224 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1223 - -
Ahy12g0925 1224 Coils Coil 837 920 - -
Ahy12g0925 1224 PIRSF SMC 9 1221 IPR024704 GO:0005524|GO:0016887
Ahy12g0925 1224 Coils Coil 759 786 - -
Ahy12g0925 1224 SMART SMC_hinge_2 525 641 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Ahy12g0925 1224 Coils Coil 731 751 - -
Ahy12g0925 1224 Coils Coil 683 703 - -
Ahy12g0925 1224 Coils Coil 206 239 - -
Ahy12g0925 1224 Gene3D - 946 1223 IPR027417 -
Ahy12g0925 1224 Gene3D - 10 204 IPR027417 -
Ahy12g0925 1224 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 10 1223 - -
Ahy12g0925 1224 SUPERFAMILY Smc hinge domain 489 690 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0925 Ahy-Chr12 18667356 18679747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0925 9 288 Structural Maintenance of Chromosomes family AT5G15920 24.211 1.97e-07 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0925 12 18667356 18679747 Ahy12g0925 12 18667356 18679747 ECH
Ahy12g0925 12 18667356 18679747 Ahy2g0791 2 14491941 14504218 hybridization