Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0915 ATGGAGGGAGGGAAATCATCATCATCGTCGTCGTCCTCAATTTCTAATGGCAATAATGTTGAAGTAAGGTATAGAGGGATTCGTAGGAGGCCATGGGGAAAATTTGCGGCGGAAATTCGTGACCCGACAAGAAAGGGGACAAGAATATGGCTTGGAACATTTGAAACTGCTGAAGAAGCTGCAAGGGCTTATGATGCTGCTGCTTTTCATTTCCGTGGCCATAGGGCCATTCTCAATTTCCCAAATGAGTATCAAGCTCCTCTTAACCCTAATTCGTCCTTGCCTTTGCCTTTGCCTCTTTCTGTTCATCCTCCTCCTCCTCCTCCTCCTCATTCGAACACGAATGCATATAATTTGGGTTCGTATTCGAATGAGGGGATAGTGCAAGGTGATCATAGTCATGATCGTGCTTTTGAATTAGAGTATTTGGACAATAAGTTGTTGGAAGAACTACTCCAACAAGCTCAAGATGATGATAGGTATATATACCAGTGCAATGATCATCATACATTTTACAGATAA 522 0.4272 MEGGKSSSSSSSSISNGNNVEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNEYQAPLNPNSSLPLPLPLSVHPPPPPPPHSNTNAYNLGSYSNEGIVQGDHSHDRAFELEYLDNKLLEELLQQAQDDDRYIYQCNDHHTFYR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0915 173 Pfam AP2 domain 23 74 IPR001471 GO:0003700|GO:0006355
Ahy12g0915 173 Gene3D AP2/ERF domain 22 83 IPR036955 GO:0003700|GO:0006355
Ahy12g0915 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 151 - -
Ahy12g0915 173 PANTHER DNA-BINDING DOMAIN 23 151 IPR044808 GO:0003700|GO:0009873
Ahy12g0915 173 SUPERFAMILY DNA-binding domain 23 82 IPR016177 GO:0003677
Ahy12g0915 173 SMART rav1_2 23 87 IPR001471 GO:0003700|GO:0006355
Ahy12g0915 173 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Ahy12g0915 173 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Ahy12g0915 173 ProSiteProfiles AP2/ERF domain profile. 23 81 IPR001471 GO:0003700|GO:0006355
Ahy12g0915 173 CDD AP2 23 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0915 Ahy-Chr12 18377675 18378587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0915 18 152 AP2-EREBP Transcription Factor Family AT3G23230 51.111 3.51e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0915 AP2 2.40E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0915 - - aip:107628225 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0915 12 18377675 18378587 Ahy2g0783 2 14287336 14288181 hybridization
Ahy16g0127 16 1264146 1264899 Ahy12g0915 12 18377675 18378587 PCT
Ahy6g1206 6 17765902 17766630 Ahy12g0915 12 18377675 18378587 PCT
Ahy12g0915 12 18377675 18378587 Ahy16g0127 16 1264146 1264899 PCT
Ahy12g0915 12 18377675 18378587 Ahy6g1206 6 17765902 17766630 PCT