Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0909 ATGATATCATATAATCATACAAAAATGAGCACTACTACGCCTCCTTTCTTTGAGATCCCAGATTGGGACATGTCCCATCATGATGATAACAATGTTTCACACACTTTCTGCTTCACAACCAACAATAATGGATTATTCACAACCCATGTTGTTAATCACCCTTCTTTCATTAATAACACTTCATCACTTTCCTTTGATGATGATATCATTGACTTCTCCATTGATTATTCACAATCACAATCACCAACAACCACAGAGAACATCAAGAAGAAGAAGAAGCTTGAAGATGATGAAGAAGAACAAGTTGATGGTGACAAGGGAATTAGAAGAAATTACATAGGAGTTCGGAAAAGGCCATGGGGGAAATTTGCAGCAGAAATAAGAGACAGAACAAGGAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCAGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGCTACAACGCTGTTCTCAACTTTCCATTCAAAAGGGTTAAAGATTCTTTGCAAGGAATGATCATGGATTCTGATTCTTGTTCTGGTTCTTCACCTGCACTTGCACTCAAAGAGAGGAATTGGATCCAAAGGAAGTTGTCAAAGACTAACAAGAAAAGGGAATCATCAGAGAAATCTTCATCATCATCAACAACTAATAATAGTAATGTGATGGTGTTTGAGGATTTGGGGGTTGAATATCTAGAACAACTCCTTAGCATTTCAGATCAAAATACCACCACAACTTAA 768 0.3802 MISYNHTKMSTTTPPFFEIPDWDMSHHDDNNVSHTFCFTTNNNGLFTTHVVNHPSFINNTSSLSFDDDIIDFSIDYSQSQSPTTTENIKKKKKLEDDEEEQVDGDKGIRRNYIGVRKRPWGKFAAEIRDRTRNGRRVWLGTFESAEDAALAYDQAAFSMRGYNAVLNFPFKRVKDSLQGMIMDSDSCSGSSPALALKERNWIQRKLSKTNKKRESSEKSSSSSTTNNSNVMVFEDLGVEYLEQLLSISDQNTTTT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0909 255 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 30 250 - -
Ahy12g0909 255 SUPERFAMILY DNA-binding domain 112 170 IPR016177 GO:0003677
Ahy12g0909 255 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Ahy12g0909 255 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Ahy12g0909 255 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Ahy12g0909 255 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Ahy12g0909 255 PANTHER DNA-BINDING DOMAIN 30 250 IPR044808 GO:0003700|GO:0009873
Ahy12g0909 255 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Ahy12g0909 255 MobiDBLite consensus disorder prediction 206 227 - -
Ahy12g0909 255 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Ahy12g0909 255 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0909 Ahy-Chr12 18158836 18160014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0909 110 253 AP2-EREBP Transcription Factor Family AT3G23240 56.250 7.59e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0909 AP2 8.20E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0909 K14516 - gmx:100811486 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0909 12 18158836 18160014 Ahy16g1132 16 20493050 20493897 ECH
Ahy12g0909 12 18158836 18160014 Ahy12g0909 12 18158836 18160014 ECH
Ahy12g0909 12 18158836 18160014 Ahy2g0766 2 13775072 13776087 hybridization