Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0908 ATGACTTCCCCTAATTTCTTTGAGATCCAGGATTGGAAAACATCATCTTCACCAAATTTTTGCTTCCAAAAATTTTCCAACAACAATGTTGATGATTCTCCTTCTTTTGATATGATTGACTTCTCCATGCCTTCACAACAAGTCCCAAAAATAGGTAACAACAACAAATACAAGGAGAAAAATGTGAAGAACAAGAAGCATGAAGAAGAATATGAAGATGTTCATCATGGTGAAAAAGGAAGGTACATAGGTGTAAGAAAAAGGCCATGGGGGAAATTCGCAGCCGAAATTCGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGATTGTGCTGAAGATGCTGCTTTGGCTTATGATGAAGCTGCATTTGCCATGAGAGGTTACAATGCTGTTCTCAATTTTCCAGTTCAAAAGGTCAAAGATTCCTTGCAAGGAATTGAGTATAGTTGTGGCAACAACAACAACAAAGGGTATTCACCAGCACTTGCACTCAAAGAGAGAAACTACATGAGAAGAAAACTGTCATCATCAAAGGAAAATGATTCTACTCAAAATTCAAAGTGTAAAGGGAAAAGTGAAGAATCATCATCATCATCATCATCAAATAGTAGTGTGATGGTGTTAGAGGACTTGGGAGTTGAATATCTTGAGCAACTCCTAAGTATTTCGTTATCTTGTGCTATTTATCTTTTGGCAGAAATTCATTACCTTTTTTTTTTCTTTTTTCTTCTTCTTCAATGA 753 0.3652 MTSPNFFEIQDWKTSSSPNFCFQKFSNNNVDDSPSFDMIDFSMPSQQVPKIGNNNKYKEKNVKNKKHEEEYEDVHHGEKGRYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDCAEDAALAYDEAAFAMRGYNAVLNFPVQKVKDSLQGIEYSCGNNNNKGYSPALALKERNYMRRKLSSSKENDSTQNSKCKGKSEESSSSSSSNSSVMVLEDLGVEYLEQLLSISLSCAIYLLAEIHYLFFFFFLLLQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0908 250 MobiDBLite consensus disorder prediction 178 206 - -
Ahy12g0908 250 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Ahy12g0908 250 PANTHER DNA-BINDING DOMAIN 28 225 IPR044808 GO:0003700|GO:0009873
Ahy12g0908 250 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Ahy12g0908 250 MobiDBLite consensus disorder prediction 178 192 - -
Ahy12g0908 250 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Ahy12g0908 250 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 28 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0908 Ahy-Chr12 18138829 18146752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0908 82 227 AP2-EREBP Transcription Factor Family AT3G23240 51.370 1.48e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy12g0908 AP2 3.70E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0908 K14516 - gmx:100527364 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0908 12 18138829 18146752 Ahy12g0908 12 18138829 18146752 ECH
Ahy12g0908 12 18138829 18146752 Ahy2g0765 2 13757297 13758244 hybridization
Ahy16g1132 16 20493050 20493897 Ahy12g0908 12 18138829 18146752 PCT
Ahy6g0270 6 3355096 3356039 Ahy12g0908 12 18138829 18146752 PCT