Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0906 ATGGACTTCTTGCGTCGCGTTAGTTGCTCTATCACCGTCGTTTTCATCTCCCCTTCCACTGCTGCCATCGCTACCGCCATTGCTGCTGCCGCCACCGCTGCTGCCCCTGCTCCCTGTGTCACCGAAGCTCCCTCCTTCCTCCCTCCAGTTGGTAAGGGAAGTGGAGGTTACATAGGAGTTCGGAAAAGGCCATGGGGGAAATTTGCAGCAGAAATAAGAGACAGAACAAGGAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCAGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGCTACAACGCTGTTCTCAACTTTCCATTCAAAAGGGTTAAAGATTCTTTGCAAGGAATGATCATGGATTCTGATTCTTGTTCTGGTTCTTCACCTGCACTTGCACTCAAAGAGAGGAATTGGATCCAAAGGAAGTTGTCAAAGACTAACAAGAAAAGGGAATCATCAGAGAAATCTTCATCATCATCAACAACTAATGTGATGGTGTTTGAGGATTTGGGGGTTGAATATCTAGAACAACTGCTTAGCATTTCAGATCAAAATACCACCACAACTTAG 594 0.4613 MDFLRRVSCSITVVFISPSTAAIATAIAAAATAAAPAPCVTEAPSFLPPVGKGSGGYIGVRKRPWGKFAAEIRDRTRNGRRVWLGTFESAEDAALAYDQAAFSMRGYNAVLNFPFKRVKDSLQGMIMDSDSCSGSSPALALKERNWIQRKLSKTNKKRESSEKSSSSSTTNVMVFEDLGVEYLEQLLSISDQNTTTT* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0906 197 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Ahy12g0906 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 39 192 - -
Ahy12g0906 197 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Ahy12g0906 197 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Ahy12g0906 197 ProSiteProfiles AP2/ERF domain profile. 56 114 IPR001471 GO:0003700|GO:0006355
Ahy12g0906 197 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Ahy12g0906 197 PANTHER DNA-BINDING DOMAIN 39 192 IPR044808 GO:0003700|GO:0009873
Ahy12g0906 197 SMART rav1_2 56 120 IPR001471 GO:0003700|GO:0006355
Ahy12g0906 197 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Ahy12g0906 197 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0906 Ahy-Chr12 17956401 17961038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0906 52 195 AP2-EREBP Transcription Factor Family AT3G23240 56.552 1.25e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0906 AP2 2.50E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0906 K14516 - gmx:100812569 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0906 12 17956401 17961038 Ahy12g0906 12 17956401 17961038 ECH