Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0900 ATGACCAATAATCCTTTGTTCTTCCACAACACAGATTTTTGGGATCAAGATTCATCATACACTGCCTCGTTTGGGTTCCAACCAATGAAGAACAATGATTGTGTTGGTTTTGATGAACCATTTGAAGATTCTTTATCGTTTGACATGGTTGACTTCTCATCATCATCATCATCAGAATCAAGAACCTTAAAGAAGGAGAAGAAACACGAAGAAGAAAAAGAGGAAGATGGTAAAAGAAGAGGAAGAAGAAGTTACATAGGAGTTCGAAAGAGGCCATGGGGAAAATTCGCAGCGGAAATTCGAGACACAACAAGAAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATACTCCATGAGAGGCTACTCTGCTCTTCTCAACTTTTCTTTCCAAAGGGTCAAAGATTCTTTGCAAGGAATCATCATGGATTCTGATTCCAACAACAAACACAAACCCTTTTCTTCTTCTTCTTCTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCCTCCAAAGAAAATTGTCATCATGGTCCTCAAAGTCTAAAAACAAGAACATCAAGAACAAAAGCAAGGAATCATCATCATCATCATCATCTAAGGAATCTTCATCAACTACTACTACTACTACTAATAATAACAATAATAGTGGTGGTGTCATGGTTTTAGAAGATTTGGGAGTTGAATATCTTGAGTATCTACTAAGCATTTCAGAATCTCATCATCATCAAAACACAACAAGCCCTAGCTACTCCATACTACCACAAAAATGA 810 0.3827 MTNNPLFFHNTDFWDQDSSYTASFGFQPMKNNDCVGFDEPFEDSLSFDMVDFSSSSSSESRTLKKEKKHEEEKEEDGKRRGRRSYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFESAEEAALAYDQAAYSMRGYSALLNFSFQRVKDSLQGIIMDSDSNNKHKPFSSSSSSPALALKERNSLQRKLSSWSSKSKNKNIKNKSKESSSSSSSKESSSTTTTTTNNNNNSGGVMVLEDLGVEYLEYLLSISESHHHQNTTSPSYSILPQK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0900 269 PANTHER DNA-BINDING DOMAIN 45 249 IPR044808 GO:0003700|GO:0009873
Ahy12g0900 269 PRINTS Ethylene responsive element binding protein signature 108 124 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 45 249 - -
Ahy12g0900 269 MobiDBLite consensus disorder prediction 203 232 - -
Ahy12g0900 269 Pfam AP2 domain 85 134 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 SUPERFAMILY DNA-binding domain 85 143 IPR016177 GO:0003677
Ahy12g0900 269 MobiDBLite consensus disorder prediction 156 232 - -
Ahy12g0900 269 CDD AP2 85 141 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 MobiDBLite consensus disorder prediction 53 83 - -
Ahy12g0900 269 MobiDBLite consensus disorder prediction 60 82 - -
Ahy12g0900 269 SMART rav1_2 84 148 IPR001471 GO:0003700|GO:0006355
Ahy12g0900 269 MobiDBLite consensus disorder prediction 156 196 - -
Ahy12g0900 269 Gene3D AP2/ERF domain 84 144 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0900 Ahy-Chr12 17837307 17838308 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0900 79 251 AP2-EREBP Transcription Factor Family AT3G23240 47.977 2.16e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0900 AP2 3.10E-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0900 K14516 - gmx:100782036 150.984