Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0896 ATGACCAATAATAGTAGTAATAATAATAATCCTTTCTTGTTCCATAACACAGATTTTTGGGATGTTGATTCGGACACTGCTTCCTTTGGGTTCCAATCATTGAAAACCAAGAATGATTTTGATGAGCCATTTGAGGATTCTTTATCATTTGAGATGATTGACTTCTCATTATCATCATCATCAGAATCAAGAACCCTAAAGAAGGAGAAGAATCGTGAAAAGGAAGAGGAAGATGATAAAAGAAGAGGAAGAAGAAGTTACATAGGAGTTCGAAAGAGGCCATGGGGAAAATTCGCAGCGGAAATTCGAGACACAACAAGAAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATACTCCATGAGAGGCTACTCTGCTCTTCTCAACTTTTCTTTCCAAAGGGTCAAAGATTCTTTGCAAGGAATCATCATGGATTCTGATTCCAACAACAAACACAAACCCTTTTCTTCTTCTTCTTCTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCCTCCAAAGAAAATTGTCATCATGGTCCTCAAAGTCTAAAAACAAGAACAAAAGCAAGGAATCATCATCATCATCATCATCTAAGGAATCTTCATCAACTACTACTGCTAATAGTAATGGTGGTGTCATGGTTTTAGAGGATTTGGGAGTTGAATATCTTGAGCATCTACTAACCATTTCAGAATCTCATCATCAAAACACAAGCCCTAACTACTATTGCAACAACAATGAAGTCTTGTTCCACTCGTCAGGTGCGATCGTCTACAATGATCCAACAATAGTGTAG 837 0.3859 MTNNSSNNNNPFLFHNTDFWDVDSDTASFGFQSLKTKNDFDEPFEDSLSFEMIDFSLSSSSESRTLKKEKNREKEEEDDKRRGRRSYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFESAEEAALAYDQAAYSMRGYSALLNFSFQRVKDSLQGIIMDSDSNNKHKPFSSSSSSPALALKERNSLQRKLSSWSSKSKNKNKSKESSSSSSSKESSSTTTANSNGGVMVLEDLGVEYLEHLLTISESHHQNTSPNYYCNNNEVLFHSSGAIVYNDPTIV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0896 278 MobiDBLite consensus disorder prediction 64 85 - -
Ahy12g0896 278 CDD AP2 87 143 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Ahy12g0896 278 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 PANTHER DNA-BINDING DOMAIN 43 243 IPR044808 GO:0003700|GO:0009873
Ahy12g0896 278 MobiDBLite consensus disorder prediction 158 196 - -
Ahy12g0896 278 MobiDBLite consensus disorder prediction 203 224 - -
Ahy12g0896 278 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Ahy12g0896 278 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Ahy12g0896 278 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 43 243 - -
Ahy12g0896 278 MobiDBLite consensus disorder prediction 158 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0896 Ahy-Chr12 17728142 17729182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0896 81 245 AP2-EREBP Transcription Factor Family AT3G23240 51.515 9.27e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy12g0896 AP2 3.20E-14 CL0081