Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0888 ATGAGATCTTCGTTAGAGGCTTCACCATCTTCATCATGCAGATCGAAGAAACACAAGGATCTGAGCTCAAAACTCGTTTCTTCAGATTCGGTTTCGCTCAATACCAAGACACCGGAGAAGCCACCGGAGCTGACGCGCCACACGCGCCGCACGCGCAATCGTGGCGTAGCGCTCTCGTTGTCGGAGGTGCGGAGAGTTGCCAAGGGCCTCCAGGAGCAGCGCGGCCATGAAACGACGTCGTTTGGCGACAAATCTGCGAGGAGGCAGATCGAGCTGCGTTCGCCGAGCAAACCACAAAAAACCAGTTCCGATGAAGAAGAAGCCTTCAAGCTTCCCGAAAAGTATGAGATTTTGGGCGAGTATTTTGCTAGGTTGGATTGTTCGATTCGATTGCTGCGCATGAAAGGAATGACACCGTCTTTCTCCAAAATCAGCCACAAGATTGAAAGTTTAACTGATAGGAGGTTTACACTTGGTCATTTGGCTCAGTTGAAATTCGTGTTGCCCGAGGCAATTGTGGCTAAGAAGGTTTTAGTGTTTGATGAGAAGACAAGTTGTATGAAGCCAGATCTGCATGTCACTATTAACTATGATGCGGTGGAGTATGAATCAAAGTCGCCAACCGAAGGCGGCCGGGGCATGCTGTTGAGGAAGTTGTTCCGTGCACGGCTGAGAGATTTTGTTGAATCCCATCCTGGGGGAGATGAAATTCCGGAAGAAGCGCTACCCGAACCATTCAACCCAAAGCAACATCGTCTATCAGACATATTGACAAGGCCTTTCTCATCTAAGGCGACAATATCGGATGCAGATGTAGCTCACCCTTCAACAGTATCATCGGCAGTCATTCCGGATAATGACACTGAAATAGACTTAGAACCTGTTAGGACATCAATTGAATCCCTTAACCAGCAACCATCAGCAGCCTCTCATGTGCCTCAATCTTTCAGAAGACGGTTCTCTCAGAGGTTGAAGGAAAATGGAACAGATAAAAATGCACTGGAAAAATTGCCATCAGATTCATTGCAAACCGTGGTTTTACCGGATTCAGAGTCAAGCCTGAGTGAAAAACCTACCTCAGAAGGAGCCAGTAATGAAGTATGCCTCACAAATTGTTCTTCATCTAGTGCTCCACTTGCTACTCCATGCAAAACCATTGAACATACAGAAAATAATGGGTCTCAAAAATGCTTTGATGCTGTGTCAACCCCAGCCAAATGTATTTCTACTCCAGCCAGCATAACACCTGCATTGCCTACGCCTCCTAAGAGACAATTCATGAGTCCAGAGGATAACTCTTCCACTACTACTAACAAGTTGGTTAGGCGCCCACCTCCATCGTTAAGGTCGTTGAAATTCGAAACTCCGGTTAAAAATAAGGTTGCAGAGAAAGAGAAATTTGAAACTCCAGTTAAAAATAAGGAGGCAGAGGAAGAATATGATGATCTTTTGGATGTTCTCCCTGAGAGTCTTCTGCAATCGATTAGAGAAAAGGAAATACAAGCAATGGAGGAAAGAGATCCAGCTATTTCACAAGCAAAGAGACGGCGAAAAATGATAGCTGGCCTACCTAAGATCTTTAACATGATTCACCTCTTGCTCCAGTCAATGAACCGCTCCGTTATCACGAAAGAGGAGCTTGTGAGCAAGATAATCTCTGGCAATTGTGATATTGTTGATAGAAGAGAAGTAGAAGAACAATTGAATTTGTTGCTAGAACTAGCACCAGAATGGATTTCTGAGAAGTTGGCCTCTAGTGGAGATTTCCTTTTCTGCATAAATAAAATGGTGGACGCCGTGACCATACGCGCATCACTTCAAGAAGCAAAATGA 1833 0.4517 MRSSLEASPSSSCRSKKHKDLSSKLVSSDSVSLNTKTPEKPPELTRHTRRTRNRGVALSLSEVRRVAKGLQEQRGHETTSFGDKSARRQIELRSPSKPQKTSSDEEEAFKLPEKYEILGEYFARLDCSIRLLRMKGMTPSFSKISHKIESLTDRRFTLGHLAQLKFVLPEAIVAKKVLVFDEKTSCMKPDLHVTINYDAVEYESKSPTEGGRGMLLRKLFRARLRDFVESHPGGDEIPEEALPEPFNPKQHRLSDILTRPFSSKATISDADVAHPSTVSSAVIPDNDTEIDLEPVRTSIESLNQQPSAASHVPQSFRRRFSQRLKENGTDKNALEKLPSDSLQTVVLPDSESSLSEKPTSEGASNEVCLTNCSSSSAPLATPCKTIEHTENNGSQKCFDAVSTPAKCISTPASITPALPTPPKRQFMSPEDNSSTTTNKLVRRPPPSLRSLKFETPVKNKVAEKEKFETPVKNKEAEEEYDDLLDVLPESLLQSIREKEIQAMEERDPAISQAKRRRKMIAGLPKIFNMIHLLLQSMNRSVITKEELVSKIISGNCDIVDRREVEEQLNLLLELAPEWISEKLASSGDFLFCINKMVDAVTIRASLQEAK* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0888 610 MobiDBLite consensus disorder prediction 67 107 - -
Ahy12g0888 610 MobiDBLite consensus disorder prediction 412 449 - -
Ahy12g0888 610 MobiDBLite consensus disorder prediction 25 39 - -
Ahy12g0888 610 Pfam DNA replication factor CDT1 like 111 194 IPR014939 -
Ahy12g0888 610 MobiDBLite consensus disorder prediction 345 365 - -
Ahy12g0888 610 MobiDBLite consensus disorder prediction 1 107 - -
Ahy12g0888 610 Pfam DNA replication factor Cdt1 C-terminal domain 490 582 IPR032054 -
Ahy12g0888 610 SUPERFAMILY "Winged helix" DNA-binding domain 100 246 IPR036390 -
Ahy12g0888 610 PANTHER DNA REPLICATION FACTOR CDT1 17 610 IPR045173 GO:0003677|GO:0030174|GO:0071163
Ahy12g0888 610 MobiDBLite consensus disorder prediction 426 443 - -
Ahy12g0888 610 CDD Cdt1_c 481 607 IPR032054 -
Ahy12g0888 610 CDD Cdt1_m 95 247 IPR014939 -
Ahy12g0888 610 SMART CDT1_2 111 244 IPR014939 -
Ahy12g0888 610 Gene3D - 477 610 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0888 Ahy-Chr12 17611843 17615415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0888 402 608 Core DNA Replication Machinery Family AT2G31270 49.048 1.07e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0888 K10727 - pvy:116124170 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0888 12 17611843 17615415 Ahy12g0888 12 17611843 17615415 ECH
Ahy12g0888 12 17611843 17615415 Ahy2g0745 2 13283055 13286396 hybridization