Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0877 ATGAGGAAGCTAAGGTTTCATGAGAAGAAGCTACTGAAGAAGGTTAACTTCTTGGAATGGAAGAGAGAAGGTGGTCGCAGAGAGAACCAAGTTATGCAGCGTTACCATCTTACTGGACGCGATGATTACAAAAAATATTCGAGCATATGCGGCATGATTCAGAAGTTGGTAAATATATTGAAGCAAATGGACCCCAAGGACCCTTTCCGTGTCGACATGACTGATAAGCTCTTGGAAAAGCTTTACAACTGTGGTGTGATTCCAACCAGGCAAAGCATCACATTATGTGAACGTATAACTGTGTCATCCTTCTGCAGACGCAGGCTTGCAACTGTTTTGGTGCGACTAAAATTCGCAGAATATCTGAAAGAAGCTGTGACATACATTGAGCAGGGGCATATACGAGTTGGTCCGGAGACAGTTACGGATCCAGCTTTCCATGTGACTAGAAATATGGAAGACTTCATTACATGGGTGGATTCGTCGAAGATCAAGAGAAAGGTGCTGCAGTACAACGATAAGTTGGATGACTATGATTTAATGAATTAA 549 0.4244 MRKLRFHEKKLLKKVNFLEWKREGGRRENQVMQRYHLTGRDDYKKYSSICGMIQKLVNILKQMDPKDPFRVDMTDKLLEKLYNCGVIPTRQSITLCERITVSSFCRRRLATVLVRLKFAEYLKEAVTYIEQGHIRVGPETVTDPAFHVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLMN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0877 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Ahy12g0877 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Ahy12g0877 182 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 1 181 - -
Ahy12g0877 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 181 IPR022801 -
Ahy12g0877 182 CDD S4 107 175 - -
Ahy12g0877 182 SMART s4_6 107 170 IPR002942 GO:0003723
Ahy12g0877 182 SUPERFAMILY Alpha-L RNA-binding motif 27 175 - -
Ahy12g0877 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Ahy12g0877 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
Ahy12g0877 182 Gene3D - 107 182 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0877 Ahy-Chr12 17164196 17167198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0877 53 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 30.928 4.67e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0877 K14560 - gmx:100782389 347.821