Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0867 ATGACAGGTTCTGGTTCTCCTTGTGGTGCTTGCAAGTTCTTGAGGAGAAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTCTGCCATGAACAAGGTGCTACCCATTTTGCAGCCATTCACAAAGTGTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTTCCGGTCGGCGACCGCTGCGAAGCGGCCGTCACGATTTCGTATGAAGCTCAGGCAAGGCTTCAAGATCCTATCTATGGCTGTGTCTCCCATATCTTTGCCCTTCAGCAACAGGTGGTGAATTTACAAGCACAGCTAGCATATCTTAAGGAACAAGCAGCACAACAAAGTTGTGTGAATGGTGGAAACCCTAATCATGAGAGATACTTTGATAAACCTAATATTGCTGATAACAACAACAATAATTTCATTACTCCTCAAGATCTTCAAAGTTGGTTGTTCAATATGGAAAATTCTTCATCTTCAAACTTGGGTGGCCTTGAATCTCTTCATCCAAATTTGTGCAACAACAATGATTCTTCTTATTATGGTAGTGATGGAAACAACAACAATAACAACAACAATGTTAATAATTCCATGATGATGATGATGGATCTAAAGCCAATTAATAATGATGGGAGTTACTATGAAAATTCAAACTCATTCTCTAGCTTTGAAGAGAGTTCTTCAAACTCCATGTCTTATGACATGGAAACAAATGGTGGGACAAAATGGTCTTTTCATGAAGTTGATGATCTTCATTCAGTGGCCTTTGGTTACAGAAGATAA 774 0.3979 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVGDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYLKEQAAQQSCVNGGNPNHERYFDKPNIADNNNNNFITPQDLQSWLFNMENSSSSNLGGLESLHPNLCNNNDSSYYGSDGNNNNNNNNVNNSMMMMMDLKPINNDGSYYENSNSFSSFEESSSNSMSYDMETNGGTKWSFHEVDDLHSVAFGYRR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0867 257 Coils Coil 87 107 - -
Ahy12g0867 257 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Ahy12g0867 257 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 256 - -
Ahy12g0867 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 256 - -
Ahy12g0867 257 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Ahy12g0867 257 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0867 Ahy-Chr12 16808155 16809843 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0867 7 122 AS2 family AT3G58190 81.897 3.01e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy12g0867 LOB 7.00E-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0867 K13945 - gmx:100776678 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0867 12 16808155 16809843 Ahy12g0867 12 16808155 16809843 ECH
Ahy12g0867 12 16808155 16809843 Ahy2g0735 2 12934570 12936176 hybridization
Ahy16g0131 16 1325391 1326708 Ahy12g0867 12 16808155 16809843 PCT
Ahy6g1201 6 17688963 17690371 Ahy12g0867 12 16808155 16809843 PCT
Ahy12g0867 12 16808155 16809843 Ahy16g0131 16 1325391 1326708 PCT
Ahy12g0867 12 16808155 16809843 Ahy6g1201 6 17688963 17690371 PCT