Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy12g0862 ATGGCTTCTAGTACCACCAGTAGCTCCGGCTCCGGCTCGCCGTGCGGGGCATGCAAGTTCCTAAGGCGAAAGTGCGCGTCGGACTGCGTATTCGCGCCATACTTCAGCTCGGAACAAGGGGCGGCAAGATTTGCAGCGATCCACAAAGTGTTTGGTGCAAGCAATGTTTCAAAGATGCTAATGCAGATTCCAAGTCATGAAAGGTGTGAGGCTGTGCTCACAATTGCTTATGAGGCTCAAGCTCGTATTAGAGACCCTGTCTATGGTTGTGTCTCTCATATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAAGCACAACTAATGCAAGTGAAGGCACAGCTAGCTCATCAAAACATGCAGAATCATCATAATCAGTGGAACAATAATAATATTGGAGTAGGACAAACATTATTATTCAATAATTATAGTAATAATAATCAATTTTGTCCCACTAATAATGATATTAGTTACATGCCATCACCCCAAAGTTGTTCACTTGATGAGTCAATTGATCAAAGTAGCATTATTAGTGATGGAATAATGAGCATGCTGAGCACTGTGGAGGATTTCTCATTCCAAGCTTGTTCCAAGAAAAGATCATCATCTTATAATGACAGTGATTTGGGTGAGCTGCAAGAATTGGCACTTAGGATGATGAGGAATTATAACTAG 675 0.4207 MASSTTSSSGSGSPCGACKFLRRKCASDCVFAPYFSSEQGAARFAAIHKVFGASNVSKMLMQIPSHERCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAHQNMQNHHNQWNNNNIGVGQTLLFNNYSNNNQFCPTNNDISYMPSPQSCSLDESIDQSSIISDGIMSMLSTVEDFSFQACSKKRSSSYNDSDLGELQELALRMMRNYN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy12g0862 224 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Ahy12g0862 224 Coils Coil 94 114 - -
Ahy12g0862 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 2 221 - -
Ahy12g0862 224 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Ahy12g0862 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy12g0862 Ahy-Chr12 16709747 16712492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy12g0862 1 222 AS2 family AT2G42430 53.937 1.46e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy12g0862 LOB 2.00E-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy12g0862 K13944 - cpap:110815110 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy12g0862 12 16709747 16712492 Ahy12g0862 12 16709747 16712492 ECH
Ahy12g0862 12 16709747 16712492 Ahy2g0732 2 12880731 12882862 hybridization
Ahy16g0132 16 1335591 1337776 Ahy12g0862 12 16709747 16712492 PCT
Ahy6g1200 6 17650960 17652469 Ahy12g0862 12 16709747 16712492 PCT
Ahy12g0862 12 16709747 16712492 Ahy16g0132 16 1335591 1337776 PCT
Ahy12g0862 12 16709747 16712492 Ahy6g1200 6 17650960 17652469 PCT